Query= gnl|UG|Hs#S592272 Human clone 23773 mRNA sequence /cds=UNKNOWN

/gb=U90904 /gi=1913882 /ug=Hs.83724 /len=1421

         (1421 letters)

 

Database: nr

           576,719 sequences; 181,542,687 total letters

 

Searchingdone

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

ref|NP_064381.1|| hypothetical protein MNCb-2146 >gi|7670427|dbj...   343  2e-093

gb|AAF79266.1|AC023279_15 (AC023279) F12K21.21 [Arabidopsis thal...   135  1e-030

gb|AAF53217.1| (AE003637) CG12292 gene product [Drosophila melan...   132  1e-029

gb|AAF34307.1| (AC021665) unknown protein; 34092-36071 [Arabidop...   132  1e-029

gb|AAD29804.1|AC006264_12 (AC006264) unknown protein [Arabidopsi...   123  6e-027

gb|AAF60757.1| (AC006804) contains similarity to hypothetical pr...   120  4e-026

pir||T06072 hypothetical protein T9A14.10 - Arabidopsis thaliana...   118  2e-025

dbj|BAB03004.1| (AP001297) gb|AAF34307.1~gene_id:F14O13.5~simila...   118  2e-025

pir||T05700 hypothetical protein F20M13.280 - Arabidopsis thalia...   118  2e-025

gb|AAG14417.1|AF248539_1 (AF248539) NTS2 protein [Nicotiana taba...    99  8e-020

 

>ref|NP_064381.1|| hypothetical protein MNCb-2146 >gi|7670427|dbj|BAA95065.1|

           (AB041581) unnamed protein product [Mus musculus]

           Length = 359

          

 Score =  343 bits (871), Expect = 2e-093

 Identities = 170/182 (93%), Positives = 176/182 (96%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           LVYITICSVIGAFSVSCVKGLGIAIKEL AGKPVL+HPLAWILL SL+VCVSTQINYLNR

Sbjct: 179 LVYITICSVIGAFSVSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVVCVSTQINYLNR 238

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA

Sbjct: 239 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 298

 

Query: 361 FKDVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLT 540

           FKDVSFSLASLPVSFRKDEKAMNGNLS+MYEVLNNNE+ L CGIE HTGEN+SRRNGNL

Sbjct: 299 FKDVSFSLASLPVSFRKDEKAMNGNLSSMYEVLNNNEDDLPCGIE-HTGENISRRNGNLP 357

 

Query: 541 AF 546

           +F

Sbjct: 358 SF 359

 

 

>gb|AAF79266.1|AC023279_15 (AC023279) F12K21.21 [Arabidopsis thaliana]

           >gi|10092387|gb|AAG12794.1|AC023913_13 (AC023913)

           hypothetical protein; 4619-2435 [Arabidopsis thaliana]

           Length = 368

          

 Score =  135 bits (337), Expect = 1e-030

 Identities = 67/144 (46%), Positives = 94/144 (64%), Gaps = 3/144 (2%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           +VYI +CS++G+ SV  VK LGIA+K  F+G   L +P  W+  L ++ CV TQ+NYLN+

Sbjct: 187 MVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLNK 246

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  L GF TI+ G FLLH

Sbjct: 247 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQDGTQIVTELCGFVTILSGTFLLHK 306

 

Query: 361 FKDV---SFSLASLPVSFRKDEKAMNG 432

            KD+   S SL +L +   K  +  NG

Sbjct: 307 TKDMVDGSSSLGNLALRLPKQLEDSNG 333

 

 

>gb|AAF53217.1| (AE003637) CG12292 gene product [Drosophila melanogaster]

           Length = 385

          

 Score =  132 bits (328), Expect = 1e-029

 Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKE-LFAGKPVLRHPLAWILLLSLIVCVSTQINYLN 177

           +VYI +CS IG+ +V   K LG+AI++ L  G  V    + W L+L  +  ++ Q+NYLN

Sbjct: 214 VVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFLTWMPWFLILVTVTFIAIQMNYLN 273

 

Query: 178 RALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLH 357

           +ALDIFNTSIVTP+YYV FTT V+  SAILFKE+  M  DD++G + GF  +I  +FLL+

Sbjct: 274 KALDIFNTSIVTPVYYVMFTTLVIAASAILFKEFTHMRFDDILGDVCGFLIVITAVFLLN 333

 

Query: 358 AFKDVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCG 489

           AF+D+  SL  +    R   + ++     +    N  E  L+ G

Sbjct: 334 AFRDIDISLNDVRGLMRPKMQRVSQFDEEVLVTSNTKERRLSYG 377

 

 

>gb|AAF34307.1| (AC021665) unknown protein; 34092-36071 [Arabidopsis thaliana]

           Length = 347

          

 Score =  132 bits (328), Expect = 1e-029

 Identities = 62/124 (50%), Positives = 84/124 (67%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           +VYI ICS++G+ SV  VK LGIA+K  F+G   L +P  WI  L ++ CV TQ+NYLN+

Sbjct: 187 MVYIGICSLVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLNK 246

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FNT+IV+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FLLH

Sbjct: 247 ALDTFNTAIVSPIYYVMFTSLTILASVIMFKDWDRQNGTQIVTEICGFVTILSGTFLLHR 306

 

Query: 361 FKDV 372

            KD+

Sbjct: 307 TKDM 310

 

 

>gb|AAD29804.1|AC006264_12 (AC006264) unknown protein [Arabidopsis thaliana]

           Length = 323

          

 Score =  123 bits (305), Expect = 6e-027

 Identities = 60/143 (41%), Positives = 86/143 (59%), Gaps = 1/143 (0%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           LVYI ICS++GA +V  +K +GIAIK    G   + +P  W+ ++  + CV TQ+ YLN+

Sbjct: 168 LVYIGICSLMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLFVMVAVTCVVTQLIYLNK 227

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FN +IV+P+YYV FTT  +  SAI+FK+W       V   L GF T++ G  +LH

Sbjct: 228 ALDTFNAAIVSPVYYVMFTTLTIVASAIMFKDWSGQDAASVASELCGFITVLTGTMILHG 287

 

Query: 361 FKDVSFSLASLP-VSFRKDEKAMN 429

            ++     AS   V +    K+MN

Sbjct: 288 TREEEQQQASSEHVRWYDSRKSMN 311

 

 

>gb|AAF60757.1| (AC006804) contains similarity to hypothetical proteins from

           Streptomyces coelicolor (GB:AL009204 and AL031182), and

           Pyrococcus horikoshii (GB:AB009524 and AP000006)

           [Caenorhabditis elegans]

           Length = 349

          

 Score =  120 bits (298), Expect = 4e-026

 Identities = 61/124 (49%), Positives = 81/124 (65%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           LVYI++CS+IG+ SV         + E  AG     + L +  L S+ +CVS Q+ YLN+

Sbjct: 226 LVYISVCSLIGSLSV---------LSETLAGNQQFTNWLTYFWLASVAMCVSVQLIYLNK 276

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALDIFNTS+VTPIYYVFFTT V+  S+IL+KEW  +   DVIG   GF T I+GIF + 

Sbjct: 277 ALDIFNTSMVTPIYYVFFTTFVILASSILYKEWSCLGASDVIGNFVGFLTTIIGIFQVKI 336

 

Query: 361 FKDV 372

           F+ +

Sbjct: 337 FRKI 340

 

 

>pir||T06072 hypothetical protein T9A14.10 - Arabidopsis thaliana

           >gi|4490325|emb|CAB38607.1| (AL035656) hypothetical

           protein [Arabidopsis thaliana]

           >gi|7270855|emb|CAB80536.1| (AL161593) hypothetical

           protein [Arabidopsis thaliana]

           Length = 217

          

 Score =  118 bits (292), Expect = 2e-025

 Identities = 53/123 (43%), Positives = 78/123 (63%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           LVYI ICS++G+ +V  +K +GIAIK  F G   + +P  W   +   +CV  Q+ YLN+

Sbjct: 64  LVYIGICSLMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFFAMVAAICVVMQMIYLNK 123

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FN +IV+PIYYV FTT  +  SAI+FK+W     D +   + GF T++ G  +LH+

Sbjct: 124 ALDTFNAAIVSPIYYVMFTTLTIVASAIMFKDWNGQNTDSIASEICGFITVLTGTVILHS 183

 

Query: 361 FKD 369

            ++

Sbjct: 184 TRE 186

 

 

>dbj|BAB03004.1| (AP001297) gb|AAF34307.1~gene_id:F14O13.5~similar to unknown

           protein [Arabidopsis thaliana]

           Length = 335

          

 Score =  118 bits (292), Expect = 2e-025

 Identities = 56/127 (44%), Positives = 80/127 (62%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           +VY+ ICS++G+ +V  VK + IAIK  F+G    ++   WI +L +  C   QINYLN+

Sbjct: 176 IVYVGICSLMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNK 235

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FNT++++P+YYV FTT  +  S I+FK+W       +   L GF TI+ G FLLH

Sbjct: 236 ALDTFNTAVISPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCGFVTILSGTFLLHK 295

 

Query: 361 FKDVSFS 381

            KD+  S

Sbjct: 296 TKDMGNS 302

 

 

>pir||T05700 hypothetical protein F20M13.280 - Arabidopsis thaliana

           >gi|4467159|emb|CAB37528.1| (AL035540) hypothetical

           protein [Arabidopsis thaliana]

           Length = 204

          

 Score =  118 bits (292), Expect = 2e-025

 Identities = 53/123 (43%), Positives = 78/123 (63%)

 Frame = +1

 

Query: 1   LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNR 180

           LVYI ICS++G+ +V  +K +GIAIK  F G   + +P  W   +   +CV  Q+ YLN+

Sbjct: 51  LVYIGICSLMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFFAMVAAICVVMQMIYLNK 110

 

Query: 181 ALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHA 360

           ALD FN +IV+PIYYV FTT  +  SAI+FK+W     D +   + GF T++ G  +LH+

Sbjct: 111 ALDTFNAAIVSPIYYVMFTTLTIVASAIMFKDWNGQNTDSIASEICGFITVLTGTVILHS 170

 

Query: 361 FKD 369

            ++

Sbjct: 171 TRE 173

 

 

>gb|AAG14417.1|AF248539_1 (AF248539) NTS2 protein [Nicotiana tabacum]

           Length = 141

          

 Score = 99.5 bits (244), Expect = 8e-020

 Identities = 46/107 (42%), Positives = 68/107 (62%)

 Frame = +1

 

Query: 52  VKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVF 231

           VK +GIA+K  F G+   ++   W  ++ +++    Q+NYLN+ALD FNT++V+PIYYV

Sbjct: 3   VKAIGIAMKLTFGGQNQFKYFETWFFIIFVLIFCLLQLNYLNKALDTFNTAVVSPIYYVM 62

 

Query: 232 FTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDV 372

           FTT  +  S I+FK++       +I  L GF TI+ G FLLH  KD+

Sbjct: 63  FTTLTIVASMIMFKDYVHQNATQIITELCGFVTILCGTFLLHKTKDM 109

 

 

  Database: nr

    Posted date:  Oct 24, 2000  1:47 AM

  Number of letters in database: 181,542,687

  Number of sequences in database:  576,719

 

Lambda     K      H

   0.318    0.135    0.000

 

Gapped

Lambda     K      H

   0.270   0.0470    0.000

 

 

Matrix: BLOSUM62

Gap Penalties: Existence: 11, Extension: 1

Number of Hits to DB: 453283839

Number of Sequences: 576719

Number of extensions: 9754201

Number of successful extensions: 22976

Number of sequences better than 1.0e-04: 23

Number of HSP's better than  0.0 without gapping: 12

Number of HSP's successfully gapped in prelim test: 1

Number of HSP's that attempted gapping in prelim test: 22960

Number of HSP's gapped (non-prelim): 14

length of query: 473

length of database: 181,542,687

effective HSP length: 54

effective length of query: 419

effective length of database: 150,399,861

effective search space: 63017541759

effective search space used: 63017541759

frameshift window, decay const: 50,  0.1

T: 12

A: 40

X1: 16 ( 7.3 bits)

X2: 38 (14.8 bits)

X3: 64 (24.9 bits)

S1: 41 (21.7 bits)

S2: 115 (49.2 bits)