Query= gnl|UG|Hs#S1090772 Homo sapiens mRNA for KIAA0652 protein,

complete cds /cds=(308,1861) /gb=AB014552 /gi=3327117 /ug=Hs.79672

/len=4040

         (4040 letters)

 

Database: nr

           576,719 sequences; 181,542,687 total letters

 

Searchingdone

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

ref|NP_055556.1|| KIAA0652 gene product >gi|3327118|dbj|BAA31627...   933  0.0

dbj|BAB14707.1| (AK023867) unnamed protein product [Homo sapiens]     860  0.0

gb|AAF54234.1| (AE003678) CG7331 gene product [Drosophila melano...   146  2e-033

sp|P34379|YLM5_CAEEL HYPOTHETICAL 49.8 KD PROTEIN D2007.5 IN CHR...    77  2e-012

 

>ref|NP_055556.1|| KIAA0652 gene product >gi|3327118|dbj|BAA31627.1| (AB014552) KIAA0652

            protein [Homo sapiens]

            Length = 517

           

 Score =  933 bits (2384), Expect = 0.0

 Identities = 463/517 (89%), Positives = 463/517 (89%)

 Frame = +3

 

Query: 309  METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 488

            METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE

Sbjct: 1    METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60

 

Query: 489  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 668

            VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR

Sbjct: 61   VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120

 

Query: 669  XXXXXXXXXAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQXXXXXXXXXXX 848

                     AITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ          

Sbjct: 121  LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180

 

Query: 849  XXITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 1028

              ITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV

Sbjct: 181  GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240

 

Query: 1029 IYPSVEDSQEVCXXXXXXXXXXXXXXXXXXYQPAALGVGSADLAYPVVFAAGLNATHPHQ 1208

            IYPSVEDSQEVC                  YQPAALGVGSADLAYPVVFAAGLNATHPHQ

Sbjct: 241  IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ 300

 

Query: 1209 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 1388

            LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA

Sbjct: 301  LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 360

 

Query: 1389 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 1568

            SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE

Sbjct: 361  SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 420

 

Query: 1569 SPLQXXXXXXXXXXXXXXNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 1748

            SPLQ              NTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS

Sbjct: 421  SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 480

 

Query: 1749 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 1859

            IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ

Sbjct: 481  IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 517

 

 

>dbj|BAB14707.1| (AK023867) unnamed protein product [Homo sapiens]

            Length = 480

           

 Score =  860 bits (2198), Expect = 0.0

 Identities = 435/517 (84%), Positives = 437/517 (84%)

 Frame = +3

 

Query: 309  METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 488

            METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE

Sbjct: 1    METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE 60

 

Query: 489  VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 668

            VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR

Sbjct: 61   VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR 120

 

Query: 669  XXXXXXXXXAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQXXXXXXXXXXX 848

                     AITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ          

Sbjct: 121  LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV 180

 

Query: 849  XXITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 1028

              ITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV

Sbjct: 181  GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV 240

 

Query: 1029 IYPSVEDSQEVCXXXXXXXXXXXXXXXXXXYQPAALGVGSADLAYPVVFAAGLNATHPHQ 1208

            IYPSVEDSQEVC                                         + + P Q

Sbjct: 241  IYPSVEDSQEVC-------------------------------------TTSFSTSPPSQ 263

 

Query: 1209 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 1388

            LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA

Sbjct: 264  LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA 323

 

Query: 1389 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 1568

            SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE

Sbjct: 324  SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE 383

 

Query: 1569 SPLQXXXXXXXXXXXXXXNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 1748

            SPLQ              NTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS

Sbjct: 384  SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS 443

 

Query: 1749 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 1859

            IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ

Sbjct: 444  IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ 480

 

 

>gb|AAF54234.1| (AE003678) CG7331 gene product [Drosophila melanogaster]

           Length = 523

          

 Score =  146 bits (364), Expect = 2e-033

 Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 17/211 (8%)

 Frame = +3

 

Query: 321 LNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHE 500

           LN+ +R DL+KFIKF  LK+ QV+VQ+RLGEK+ T+ +    GSDWFN+A++D PEV  E

Sbjct: 6   LNAAER-DLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPL-AGSDWFNIAVQDHPEVLDE 63

 

Query: 501 AKKAL---AGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCD------------- 632

            K+AL    G+       +CVEISLKT+EGD M LE+W L++ +  +            

Sbjct: 64  TKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEVWSLDLLQPQNGASPATNDLNPEG 123

 

Query: 633 KEIKVSYTVYNRXXXXXXXXXAITRVTPAYRLSRKQ-GHEYVILYRIYFGEVQLSGLGEG 809

           + +K ++ +YNR         ++TR TPAY+LSR+Q    Y I YRIY    Q+  LGEG

Sbjct: 124 QTLKAAHAIYNRMGIMLKSLISLTRTTPAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEG 183

 

Query: 810 FQXXXXXXXXXXXXXITLSCAYRINLAFMSTRQFERTPPIMGIIIDHF 953

            +             + +S AYR  L    T     +  IM +  DHF

Sbjct: 184 HKHVKIGQLSTIVGSLVMSVAYRTKLTISPTAAQSESNTIM-LKSDHF 230

 

 

>sp|P34379|YLM5_CAEEL HYPOTHETICAL 49.8 KD PROTEIN D2007.5 IN CHROMOSOME III

           >gi|630593|pir||S44786 D2007.5 protein - Caenorhabditis

           elegans >gi|289667|gb|AAA27996.1| (L16560) putative

           [Caenorhabditis elegans]

           Length = 443

          

 Score = 76.9 bits (186), Expect = 2e-012

 Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

 Frame = +3

 

Query: 348 DKFIKFFALKTVQVIVQARLGEKICTRS-SSSPTGSDWFNLAIKDIPEVTHEAKKALAGQ 524

           +K++KFF+++ VQ I+Q+RLG++I ++    S    DWFN+ I ++ E++   K  +  

Sbjct: 9   NKWLKFFSVRMVQSIIQSRLGDEIESKCVPYSENAVDWFNMRIDELGEISAYLKSNIK-S 67

 

Query: 525 LPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRXXXXXXXXXAIT 704

            P VG ++ +E  L T  G  + LE W L  +E  D   +    +Y+            

Sbjct: 68  YPPVG-TLTLEFLLYTPSGQLLPLEAWILSSSEGTDDCSR--NELYHDMSTLLRSAIVSA 124

 

Query: 705 RVTPAYRLSRKQGH--EYVILYRIYFGEVQLSGLGEGFQXXXXXXXXXXXXXITLSCAYR 878

           R+TP +RL  K+ H   +VI+YR++  ++  S +G+G +             I+L   YR

Sbjct: 125 RMTPMHRLYVKKQHLETFVIMYRVFENDIS-SDMGKGKKTRKIGELVSKFGNISLDLHYR 183

 

Query: 879 INLAF 893

            ++ F

Sbjct: 184 TSMHF 188

 

 

  Database: nr

    Posted date:  Oct 24, 2000  1:47 AM

  Number of letters in database: 181,542,687

  Number of sequences in database:  576,719

 

Lambda     K      H

   0.318    0.135    0.000

 

Gapped

Lambda     K      H

   0.270   0.0470    0.000

 

 

Matrix: BLOSUM62

Gap Penalties: Existence: 11, Extension: 1

Number of Hits to DB: 1504036679

Number of Sequences: 576719

Number of extensions: 37252535

Number of successful extensions: 115702

Number of sequences better than 1.0e-04: 8

Number of HSP's better than  0.0 without gapping: 2

Number of HSP's successfully gapped in prelim test: 2

Number of HSP's that attempted gapping in prelim test: 115693

Number of HSP's gapped (non-prelim): 5

length of query: 1346

length of database: 181,542,687

effective HSP length: 57

effective length of query: 1289

effective length of database: 148,669,704

effective search space: 191635248456

effective search space used: 191635248456

frameshift window, decay const: 50,  0.1

T: 12

A: 40

X1: 16 ( 7.3 bits)

X2: 38 (14.8 bits)

X3: 64 (24.9 bits)

S1: 41 (21.7 bits)

S2: 120 (51.2 bits)