Query= gnl|UG|Hs#S512817 35d4 Homo sapiens cDNA /gb=W27625 /gi=1307573

/ug=Hs.74284 /len=682

         (682 letters)

 

Database: nr

           576,719 sequences; 181,542,687 total letters

 

Searchingdone

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

dbj|BAA13405.1| (D87466) Similar to S.cerevisiae hypothetical pr...   172  5e-047

gb|AAF49037.1| (AE003514) CG6597 gene product [Drosophila melano...   140  5e-036

dbj|BAB00845.1| (AB024033) gene_id:MBK21.14~similar to unknown p...    61  3e-010

ref|NP_060655.1|| hypothetical protein FLJ10704 >gi|7022897|dbj|...    66  3e-010

gb|AAF49617.1| (AE003530) CG7427 gene product [Drosophila melano...    66  4e-010

ref|NP_061276.1|| Rp42 >gi|6166507|gb|AAF04863.1|AF198092_1 (AF1...    66  4e-010

ref|NP_065691.1|| RP42 homolog >gi|9896486|gb|AAG00606.2|AF29210...    64  1e-009

pir||T23140 hypothetical protein H38K22.2b - Caenorhabditis eleg...    62  5e-009

pir||T23141 hypothetical protein H38K22.2a - Caenorhabditis eleg...    62  5e-009

gb|AAF82155.1|AC034256_19 (AC034256) Contains similarity to RP42...    58  1e-007

 

>dbj|BAA13405.1| (D87466) Similar to S.cerevisiae hypothetical protein L3111

           (S59316) [Homo sapiens]

           Length = 309

          

 Score =  172 bits (432), Expect(2) = 5e-047

 Identities = 81/127 (63%), Positives = 97/127 (75%)

 Frame = +1

 

Query: 37  KCKISSYCRSQPPARLISGEEHFSSKKCLAWFYEYAGPDEVVGPEGMEKFXEDIGVXPEN 216

           K +  S  R     R+ + EE FSSK+CL WFYEYAG D+VVGPEGMEKF EDIGV PEN

Sbjct: 96  KSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPEN 155

 

Query: 217 IIMLVLAWKLEAESMGFFTKEEWLKGMTSSQCDCTEKLQNKFDFWRSQLNDISPFKNIYR 396

           ++MLVLAWKL+A++MG+FT +EWLKGMTS QCD TEKL+N  D+ RS LND + FK IYR

Sbjct: 156 VVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYR 215

 

Query: 397 YAXDLGK 417

           YA D  +

Sbjct: 216 YAFDFAR 222

 

 

 Score = 37.5 bits (85), Expect(2) = 5e-047

 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

 Frame = +2

 

Query: 410 WARDKDQRSLDIDTAKSYVSSSAWGGTWPLFSSIXPAXEQXSF-XL*QXQW 559

           +AR+KDQRSLDI+TAK  +     G  WPLF       EQ  +  + + QW

Sbjct: 220 FAREKDQRSLDINTAKCML-GLLLGKIWPLFPVFHQFLEQSKYKVINKDQW 269

 

 

>gb|AAF49037.1| (AE003514) CG6597 gene product [Drosophila melanogaster]

           Length = 233

          

 Score =  140 bits (350), Expect(2) = 5e-036

 Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

 Frame = +1

 

Query: 67  QPPARLISGEEHFSSKKCLAWFYEYAGPDE--VVGPEGMEKFXEDIGVXPENIIMLVLAW 240

           Q   R I  E+ FS K+C+AWF EY  PDE   +GP+GMEKF EDIGV PENI+MLVLA+

Sbjct: 20  QSSRRHIRLEDGFSQKRCMAWFQEYTTPDEPETLGPDGMEKFCEDIGVEPENIVMLVLAY 79

 

Query: 241 KLEAESMGFFTKEEWLKGMTSSQCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

           K+ A  MGFF+++EWLKG+T   CD   K+  K D+ RS LND + FK+IYRYA D  K

Sbjct: 80  KMGATQMGFFSQQEWLKGLTELDCDSAAKMVVKLDYLRSILNDPNSFKSIYRYAYDFAK 138

 

 

 Score = 32.5 bits (72), Expect(2) = 5e-036

 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

 Frame = +2

 

Query: 410 WARDKDQRSLDIDTAKSYVSSSAWGGTWPLFSSIXPAXEQXSF-XL*QXQW-TILXF 574

           +A+D DQR +DI TAK+ +     G  WPL+       EQ  +  + + QW  IL F

Sbjct: 136 FAKDSDQRCMDILTAKAML-QLLLGKHWPLYPQFAQFLEQSKYKAINKDQWCNILEF 191

 

 

>dbj|BAB00845.1| (AB024033) gene_id:MBK21.14~similar to unknown protein

           (gb|AAF04863.1) [Arabidopsis thaliana]

           Length = 250

          

 Score = 60.9 bits (145), Expect(2) = 3e-010

 Identities = 31/96 (32%), Positives = 52/96 (53%), Gaps = 1/96 (1%)

 Frame = +1

 

Query: 130 FYEYAGP-DEVVGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSS 306

           +  Y  P  +++  EG+     D+ V P++I+ LVL+W + A +   F+++E++ G+ +

Sbjct: 64  YNRYKDPYSDMILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFSRQEFISGLQAL 123

 

Query: 307 QCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

             D   KLQ K  F RS+L D   F  IY +A    K

Sbjct: 124 GVDSIGKLQEKLPFMRSELKDEQKFHEIYNFAFGWAK 160

 

 

 Score = 25.4 bits (54), Expect(2) = 3e-010

 Identities = 12/30 (40%), Positives = 16/30 (53%)

 Frame = +2

 

Query: 410 WARDKDQRSLDIDTAKSYVSSSAWGGTWPL 499

           WA++K Q+SL +DTA            WPL

Sbjct: 158 WAKEKGQKSLALDTAIGMWQLLFAEREWPL 187

 

 

>ref|NP_060655.1|| hypothetical protein FLJ10704 >gi|7022897|dbj|BAA91760.1|

           (AK001566) unnamed protein product [Homo sapiens]

           Length = 186

          

 Score = 66.3 bits (159), Expect = 3e-010

 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

 Frame = +1

 

Query: 112 KKCLAWFYEYAGPDEV--VGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEW 285

           KK    +  Y  P +   +G +G+++F +D+ + P +I +LV+AWK  A +   F+++E+

Sbjct: 63  KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 122

 

Query: 286 LKGMTSSQCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

           L GMT   CD  EKL+        +L D + FK+ Y++     K

Sbjct: 123 LDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAK 166

 

 

>gb|AAF49617.1| (AE003530) CG7427 gene product [Drosophila melanogaster]

           Length = 291

          

 Score = 66.0 bits (158), Expect = 4e-010

 Identities = 30/96 (31%), Positives = 53/96 (54%), Gaps = 2/96 (2%)

 Frame = +1

 

Query: 130 FYEYAGPDEV--VGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKGMTS 303

           F  Y  P +   +G +G+  F ED+ + P++ ++L++AWK  AE    F+++E++ GM 

Sbjct: 68  FMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLIIAWKFHAEVQCEFSRDEFINGMCD 127

 

Query: 304 SQCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

              D  +KL+ K      +LND   FK+ Y +  +  K

Sbjct: 128 LGIDSIDKLKTKLPILEQELNDAGKFKDFYHFTFNYAK 165

 

 

>ref|NP_061276.1|| Rp42 >gi|6166507|gb|AAF04863.1|AF198092_1 (AF198092) RP42 [Mus

           musculus]

           Length = 259

          

 Score = 66.0 bits (158), Expect = 4e-010

 Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

 Frame = +1

 

Query: 112 KKCLAWFYEYAGPDEV--VGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEW 285

           KK    +  Y  P +   +G +G+++F +D+ + P +I +L++AWK  A +   F+K+E+

Sbjct: 63  KKLEQLYTRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 122

 

Query: 286 LKGMTSSQCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

           + GMT   CD  EKL+ +      +L +   FK+ Y++  +  K

Sbjct: 123 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAK 166

 

 

>ref|NP_065691.1|| RP42 homolog >gi|9896486|gb|AAG00606.2|AF292100_1 (AF292100) RP42

           protein [Homo sapiens]

           Length = 259

          

 Score = 64.4 bits (154), Expect = 1e-009

 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

 Frame = +1

 

Query: 112 KKCLAWFYEYAGPDEV--VGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEW 285

           KK    +  Y  P +   +G +G+++F +D+ + P +I +L++AWK  A +   F+K+E+

Sbjct: 63  KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 122

 

Query: 286 LKGMTSSQCDCTEKLQNKFDFWRSQLNDISPFKNIYRYAXDLGK 417

           + GMT   CD  E+L+ +      +L +   FK+ Y++  +  K

Sbjct: 123 MDGMTELGCDSIEQLKAQIPKMEQELKEPGRFKDFYQFTFNFAK 166

 

 

>pir||T23140 hypothetical protein H38K22.2b - Caenorhabditis elegans

           >gi|5824530|emb|CAB54260.1| (AL024499) H38K22.2b

           [Caenorhabditis elegans]

           Length = 283

          

 Score = 62.5 bits (149), Expect = 5e-009

 Identities = 34/96 (35%), Positives = 55/96 (56%), Gaps = 6/96 (6%)

 Frame = +1

 

Query: 130 FYEYAGPDEVVG-----PEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKG 294

           F +Y  P + VG     P G+ +   D+G    +  +LVLAWK  A++   F+ +EW+KG

Sbjct: 16  FNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKG 75

 

Query: 295 MTSSQCDCTEKLQNKFDFWRSQL-NDISPFKNIYRYAXDLGK 417

           MT+ Q D  + L+ + D   S L +D + F  +Y +A +  K

Sbjct: 76  MTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAK 117

 

 

>pir||T23141 hypothetical protein H38K22.2a - Caenorhabditis elegans

           >gi|5824531|emb|CAB54261.1| (AL024499) cDNA EST

           yk187g12.5 comes from this gene~cDNA EST yk514g2.5 comes

           from this gene~cDNA EST yk524h10.5 comes from this gene

           [Caenorhabditis elegans]

           Length = 336

          

 Score = 62.5 bits (149), Expect = 5e-009

 Identities = 34/96 (35%), Positives = 55/96 (56%), Gaps = 6/96 (6%)

 Frame = +1

 

Query: 130 FYEYAGPDEVVG-----PEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKG 294

           F +Y  P + VG     P G+ +   D+G    +  +LVLAWK  A++   F+ +EW+KG

Sbjct: 69  FNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKG 128

 

Query: 295 MTSSQCDCTEKLQNKFDFWRSQL-NDISPFKNIYRYAXDLGK 417

           MT+ Q D  + L+ + D   S L +D + F  +Y +A +  K

Sbjct: 129 MTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAK 170

 

 

>gb|AAF82155.1|AC034256_19 (AC034256) Contains similarity to RP42 from Mus musculus

           gb|AF198092 and is a member of the Transposase PF|00872

           and UTP-glucose-1-phosphate uridylyltransferase PF|01704

           families.  EST gb|AI998363 comes from this gene.

           [Arabidopsis thaliana]

           Length = 237

          

 Score = 57.8 bits (137), Expect = 1e-007

 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

 Frame = +1

 

Query: 130 FYEYAGPDE-VVGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSS 306

           F +YA     ++ PEG+E+   ++ V   +I +L+LAWK++AE  G+FT EEW +G+ +

Sbjct: 41  FNQYANKSSSLIDPEGIEELCSNLEVSHTDIRILMLAWKMKAEKQGYFTHEEWRRGLKAL 100

 

Query: 307 QCDCTEKLQ 333

           + D   KL+

Sbjct: 101 RADTINKLK 109

 

 

  Database: nr

    Posted date:  Oct 24, 2000  1:47 AM

  Number of letters in database: 181,542,687

  Number of sequences in database:  576,719

 

Lambda     K      H

   0.318    0.135    0.000

 

Gapped

Lambda     K      H

   0.270   0.0470    0.000

 

 

Matrix: BLOSUM62

Gap Penalties: Existence: 11, Extension: 1

Number of Hits to DB: 174381612

Number of Sequences: 576719

Number of extensions: 3178426

Number of successful extensions: 7948

Number of sequences better than 1.0e-04: 21

Number of HSP's better than  0.0 without gapping: 10

Number of HSP's successfully gapped in prelim test: 1

Number of HSP's that attempted gapping in prelim test: 7934

Number of HSP's gapped (non-prelim): 14

length of query: 227

length of database: 181,542,687

effective HSP length: 52

effective length of query: 174

effective length of database: 151,553,299

effective search space: 26370274026

effective search space used: 26370274026

frameshift window, decay const: 50,  0.1

T: 12

A: 40

X1: 16 ( 7.3 bits)

X2: 38 (14.8 bits)

X3: 64 (24.9 bits)

S1: 41 (21.7 bits)

S2: 112 (48.0 bits)