Query=
gnl|UG|Hs#S344259 yw97d01.r1 Homo sapiens cDNA, 5' end
/clone=IMAGE:260161
/clone_end=5' /gb=N45386 /gi=1186552 /ug=Hs.7001
/len=621
(621 letters)
Database:
nr
576,719 sequences; 181,542,687 total letters
Searchingdone
Score
E
Sequences
producing significant alignments:
(bits)
Value
emb|CAB94877.1|
(AL359591) hypothetical protein [Homo sapiens]
96
9e-022
gb|AAF50185.1|
(AE003550) CG6707 gene product [alt 2] [Drosophil... 78 1e-013
gb|AAF50186.1|
(AE003550) CG6707 gene product [alt 1] [Drosophil... 78 1e-013
>emb|CAB94877.1|
(AL359591) hypothetical protein [Homo sapiens]
Length = 187
Score = 95.6 bits (234), Expect(2) =
9e-022
Identities = 48/94 (51%), Positives =
57/94 (60%), Gaps = 6/94 (6%)
Frame = +3
Query:
3
GKKYVRXPW*LSPYLQXDIPTDCMPSAYCKRIINLGPV------HPGPLSPEPQPMGVRV
164
GKKYVR P +
P C+RIINLGPV P + QP G RV
Sbjct:
23
GKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV
82
Query:
165 ICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRC 284
+CGHC NTFLW E
TLA+CPHC+K+SS+G
PR+RC
Sbjct:
83
VCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRC 122
Score = 29.7 bits (65), Expect(2) =
9e-022
Identities = 12/25 (48%), Positives =
16/25 (64%)
Frame = +2
Query:
356 ARRYGGIYAAWAFVILLAVLCLGRA 430
ARR+ Y +WA LL ++CL RA
Sbjct:
147 ARRFRATYVSWAIAYLLGLICLIRA 171
>gb|AAF50185.1|
(AE003550) CG6707 gene product [alt 2] [Drosophila
melanogaster]
Length = 266
Score = 77.6 bits (188), Expect =
1e-013
Identities = 43/95 (45%), Positives =
51/95 (53%)
Frame = +3
Query:
3
GKKYVRXPW*LSPYLQXDIPTDCMPSAYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCK
182
GKKYVR P +
P CKRIINL P P P P RV CGHC
Sbjct:
111 GKKYVRCPCNCLLICKSSSQRIACPRPNCKRIINLAPSPVTPPVPT-MPGMCRVTCGHCS
169
Query:
183 NTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCI 287
+TFL+ + + LARCPHCRKVSS+G R+ R +
Sbjct:
170 DTFLFNTYHN-ALARCPHCRKVSSVGSRFANSRAV 203
>gb|AAF50186.1|
(AE003550) CG6707 gene product [alt 1] [Drosophila
melanogaster]
Length = 232
Score = 77.6 bits (188), Expect =
1e-013
Identities = 43/95 (45%), Positives =
51/95 (53%)
Frame = +3
Query:
3
GKKYVRXPW*LSPYLQXDIPTDCMPSAYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCK
182
GKKYVR P +
P CKRIINL P P P P RV CGHC
Sbjct:
76
GKKYVRCPCNCLLICKSSSQRIACPRPNCKRIINLAPSPVTPPVPT-MPGMCRVTCGHCS
134
Query:
183 NTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCI 287
+TFL+ + + LARCPHCRKVSS+G R+ R +
Sbjct:
135 DTFLFNTYHN-ALARCPHCRKVSSVGSRFANSRAV 168
Database: nr
Posted date: Oct 24, 2000 1:47 AM
Number of letters in database:
181,542,687
Number of sequences in database: 576,719
Lambda K
H
0.318 0.135 0.000
Gapped
Lambda K
H
0.270 0.0470 0.000
Matrix:
BLOSUM62
Gap
Penalties: Existence: 11, Extension: 1
Number
of Hits to DB: 248099497
Number
of Sequences: 576719
Number
of extensions: 5968851
Number
of successful extensions: 16704
Number
of sequences better than 1.0e-04: 6
Number
of HSP's better than 0.0 without
gapping: 1
Number
of HSP's successfully gapped in prelim test: 2
Number
of HSP's that attempted gapping in prelim test: 16694
Number
of HSP's gapped (non-prelim): 8
length
of query: 207
length
of database: 181,542,687
effective
HSP length: 52
effective
length of query: 154
effective
length of database: 151,553,299
effective
search space: 23339208046
effective
search space used: 23339208046
frameshift
window, decay const: 50,
0.1
T:
12
A:
40
X1:
16 ( 7.3 bits)
X2:
38 (14.8 bits)
X3:
64 (24.9 bits)
S1:
41 (21.7 bits)
S2:
112 (48.0 bits)