Query= gnl|UG|Hs#S1367581 Homo sapiens mRNA for KIAA0831 protein,

complete cds /cds=(576,1715) /gb=AB020638 /gi=4240150 /ug=Hs.103000

/len=4943

         (4943 letters)

 

Database: nr

           576,719 sequences; 181,542,687 total letters

 

Searchingdone

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

ref|NP_055739.1|| KIAA0831 protein >gi|4240151|dbj|BAA74854.1| (...   675  0.0

sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAMINATION WAR...   116  1e-033

gb|AAF56856.1| (AE003768) CG11877 gene product [Drosophila melan...   140  1e-031

sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAMINATION WAR...   108  9e-031

sp|P39188|ALU1_HUMAN ALU SUBFAMILY J SEQUENCE CONTAMINATION WARN...   109  2e-025

sp|P39192|ALU5_HUMAN ALU SUBFAMILY SC SEQUENCE CONTAMINATION WAR...    99  2e-021

sp|P39189|ALU2_HUMAN ALU SUBFAMILY SB SEQUENCE CONTAMINATION WAR...   106  2e-021

sp|P39190|ALU3_HUMAN ALU SUBFAMILY SB1 SEQUENCE CONTAMINATION WA...   106  2e-021

ref|NP_060265.1|| hypothetical protein FLJ20378 >gi|7020440|dbj|...    83  2e-021

sp|P39195|ALU8_HUMAN ALU SUBFAMILY SX SEQUENCE CONTAMINATION WAR...    92  3e-021

 

>ref|NP_055739.1|| KIAA0831 protein >gi|4240151|dbj|BAA74854.1| (AB020638) KIAA0831

            protein [Homo sapiens]

            Length = 379

           

 Score =  675 bits (1723), Expect = 0.0

 Identities = 330/379 (87%), Positives = 330/379 (87%)

 Frame = +1

 

Query: 577  MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG 756

            MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG

Sbjct: 1    MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG 60

 

Query: 757  DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPAXXXXXXXXXXXXXX 936

            DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPA             

Sbjct: 61   DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSST 120

 

Query: 937  XXKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD 1116

              KLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD

Sbjct: 121  VSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD 180

 

Query: 1117 MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA 1296

            MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA

Sbjct: 181  MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA 240

 

Query: 1297 NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA 1476

            NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA

Sbjct: 241  NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA 300

 

Query: 1477 GESDESGDERVSDEETDLGTDWENLPSPRFCDIPXXXXXXXXXXXXXXXXXXXXXXXXXX 1656

            GESDESGDERVSDEETDLGTDWENLPSPRFCDIP                         

Sbjct: 301  GESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGM 360

 

Query: 1657 XXXXXXXVTSWFKAYTGHR 1713

                   VTSWFKAYTGHR

Sbjct: 361  ISSAAASVTSWFKAYTGHR 379

 

 

>sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 593

           

 Score =  116 bits (287), Expect(2) = 1e-033

 Identities = 54/69 (78%), Positives = 57/69 (82%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGSLEVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREA 2998

            RARWLTPVIPALWEAEAGGS EVRS R AW TW NPVS ++ +  R WWR PVIPATREA

Sbjct: 2    RARWLTPVIPALWEAEAGGSPEVRSSRPAWPTWXNPVSTKNTKISRAWWRAPVIPATREA 61

 

Query: 2999 AAGESLEPG 3025

             AGESLEPG

Sbjct: 62   EAGESLEPG 70

 

 

 Score = 90.5 bits (221), Expect(2) = 2e-022

 Identities = 41/60 (68%), Positives = 44/60 (73%)

 Frame = -2

 

Query: 2983 WDYRRAPPHPVIFCTSSRNRVSPC*PGCSQTPDLK*SACLGLPKCRDYRREPPRPAGKFF 2804

            WDYRR PP P  FC  SR+ VSPC PG S+TPDL+ S  LGLPKC DYRREPPRPA   F

Sbjct: 340  WDYRRPPPRPANFCIFSRDGVSPCWPGWSRTPDLRXSTRLGLPKCWDYRREPPRPAXXXF 399

 

 

 Score = 82.3 bits (200), Expect(2) = 2e-027

 Identities = 40/62 (64%), Positives = 41/62 (65%)

 Frame = +1

 

Query: 3583 FFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVET 3762

            FFL       AQAGV WR L SLQPP PGF+RF  LSLPSSWDYR  P  PANFCI   

Sbjct: 299  FFLRRSFALVAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRPPPRPANFCIFSRD 358

 

Query: 3763 GV 3768

            GV

Sbjct: 359  GV 360

 

 

 Score = 81.5 bits (198), Expect(2) = 1e-018

 Identities = 50/97 (51%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

 Frame = +1

 

Query: 2731 CSEMQRRSLRLMLLCSVLGKAQYKERISQ---PGAVAHACNPXXXXXXXXXXXXXQEFES 2901

            CSE + R       C+     + K R+ +   PGAVAHACNP             QEFE+

Sbjct: 174  CSEPRSRH------CTPAWATRAKLRLKKXXXPGAVAHACNPSTLGGRGGWITXGQEFET 227

 

Query: 2902 SLANMVKPCFC*KCRKLPGVVAHACNPSYSGGCGGRIA*T 3021

            SLANMVKP    K +  PGVVA ACNPSYSGG G RIA T

Sbjct: 228  SLANMVKPRLYXKYKNXPGVVAGACNPSYSGGXGRRIAXT 267

 

 

 Score = 76.5 bits (185), Expect(2) = 6e-021

 Identities = 45/68 (66%), Positives = 49/68 (71%)

 Frame = -1

 

Query: 3020 VQAIXXXXXXXXXXXQACATTPGNFLHF*QKQGFTMLARLLSNS*PQVIRLPRPPKVPGL 2841

            VQAI           QA ATTPG FL+F  ++GFTMLARL+SNS PQVI  PRPPKV GL

Sbjct: 526  VQAILLPQPPEXLGLQAPATTPGXFLYFXXRRGFTMLARLVSNSXPQVIHPPRPPKVLGL 585

 

Query: 2840 QA*ATAPG 2817

            QA ATAPG

Sbjct: 586  QAXATAPG 593

 

 

 Score = 76.1 bits (184), Expect(2) = 1e-021

 Identities = 39/71 (54%), Positives = 50/71 (69%)

 Frame = +3

 

Query: 2745 AQILTADATLLCSGESTI*RKNFPAGRGGSRL*SRHFGRPRQADHLRSGV*EQPG*HGET 2924

            A+I    ++L    E+   +K   AGRGGSRL S+HFGRPR+ DHLRSGV +QPG HGET

Sbjct: 77   AEIAPLHSSLGNKSETPSQKKXXXAGRGGSRLXSQHFGRPRRVDHLRSGVRDQPGQHGET 136

 

Query: 2925 LFLLEVQKITG 2957

              LL++QK+ G

Sbjct: 137  PSLLKIQKLAG 147

 

 

 Score = 72.6 bits (175), Expect(2) = 6e-019

 Identities = 37/53 (69%), Positives = 38/53 (70%)

 Frame = +2

 

Query: 3611 LPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGF 3769

            LPRLEC GAISA CN  L GS DS  SASRVAGI G  HHA+LIFVF    GF

Sbjct: 408  LPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVETGF 460

 

 

 Score = 71.8 bits (173), Expect(2) = 2e-021

 Identities = 40/69 (57%), Positives = 41/69 (58%), Gaps = 3/69 (4%)

 Frame = -3

 

Query: 2991 RVAGITGVRHHTR*FSALLAETGFHHVSQAALKLLTXXXXXXXXXXXAGITGVSHRARLG 2812

            RVAGITG RHH R     L ETGFHHV QA L+LLT           AGITGVSHRAR 

Sbjct: 437  RVAGITGARHHARLIFVFLVETGFHHVGQAGLELLTSGDPPASASQSAGITGVSHRARXX 496

 

Query: 2811 NSF---FILCFP 2785

              F   F  C P

Sbjct: 497  XFFETEFRSCCP 508

 

 

 Score = 67.5 bits (162), Expect(2) = 9e-023

 Identities = 37/62 (59%), Positives = 43/62 (68%)

 Frame = -3

 

Query: 3768 NPRLYQNTKISWA*WQVPIIPATREAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQ 3589

            NP   +NTKIS A W+ P+IPATREAE  ES EP R  LQ AE+AP HSSLG+ +    Q

Sbjct: 36   NPVSTKNTKISRAWWRAPVIPATREAEAGESLEPGRRRLQXAEIAPLHSSLGNKSETPSQ 95

 

Query: 3588 KK 3583

            KK

Sbjct: 96   KK 97

 

 

 Score = 65.2 bits (156), Expect(2) = 2e-027

 Identities = 33/61 (54%), Positives = 37/61 (60%)

 Frame = +2

 

Query: 3743 FVFW*RRGFSPCWPGWS*TPGFG*SACLGLLGCWDCRPEPPRPAPYGFFYTAGISVLSAQ 3922

            F  + R G SPCWPGWS TP    S  LGL  CWD R EPPRPA   FF   G+S+L  +

Sbjct: 352  FCIFSRDGVSPCWPGWSRTPDLRXSTRLGLPKCWDYRREPPRPAXXXFF-XDGVSLLLPR 410

 

Query: 3923 L 3925

            L

Sbjct: 411  L 411

 

 

 Score = 64.4 bits (154), Expect(2) = 9e-023

 Identities = 30/44 (68%), Positives = 31/44 (70%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSPEARSSRPAWPTW*KPPSLPKYK 3743

            GRARWL P IPA  EA+A GSPE RSSRPAWPTW  P S    K

Sbjct: 1    GRARWLTPVIPALWEAEAGGSPEVRSSRPAWPTWXNPVSTKNTK 44

 

 

 Score = 64.0 bits (153), Expect = 1e-008

 Identities = 36/62 (58%), Positives = 37/62 (59%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF       CPGWS VA S L AT+ S VQAIL  QPPE LGL APA  P  FLYF   

Sbjct: 498  FFETEFRSCCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLYFXXRR 557

 

Query: 3765 GF 3770

            GF

Sbjct: 558  GF 559

 

 

 Score = 62.5 bits (149), Expect = 4e-008

 Identities = 45/96 (46%), Positives = 51/96 (52%), Gaps = 1/96 (1%)

 Frame = -1

 

Query: 3872 PGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVKTPVSTKIQKLAG-HDGRCL*SQXXX 3696

            PGAVA ACNPSTLGG+G  IT  QEF+TSLANMVK  +  K +   G   G C  S   

Sbjct: 200  PGAVAHACNPSTLGGRGGWITXGQEFETSLANMVKPRLYXKYKNXPGVVAGACNPSYSGG 259

 

Query: 3695 XXXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVSKK 3585

                       +   S  R     P    ER+SVSKK

Sbjct: 260  XGRRIAXTREAEVAVSRDRATALQPG-QQERNSVSKK 295

 

 

 Score = 62.1 bits (148), Expect = 5e-008

 Identities = 32/59 (54%), Positives = 40/59 (67%)

 Frame = -3

 

Query: 3912 KTEIPAV*KNP*GAGRGGSGLQSQHPRRPRQADHPKPGVQDQPGQHGENPRLYQNTKIS 3736

            K+E P+  K    AGRGGS L SQH  RPR+ DH + GV+DQPGQHGE P L +  K++

Sbjct: 89   KSETPSQ-KKXXXAGRGGSRLXSQHFGRPRRVDHLRSGVRDQPGQHGETPSLLKIQKLA 146

 

 

 Score = 55.4 bits (131), Expect(2) = 2e-021

 Identities = 25/35 (71%), Positives = 26/35 (73%)

 Frame = -1

 

Query: 3125 PAEGNSFFF*DGASLLLPRLECNGTISAHCNLRLP 3021

            P      FF DG SLLLPRLEC+G ISAHCNLRLP

Sbjct: 392  PRPAXXXFFXDGVSLLLPRLECSGAISAHCNLRLP 426

 

 

 Score = 52.7 bits (124), Expect = 4e-005

 Identities = 33/67 (49%), Positives = 35/67 (51%)

 Frame = -1

 

Query: 3770 KTPVSTKIQKLAGHDGRCL*SQXXXXXXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVS 3591

            +TP   KIQKLAG  G  L SQ           NPG GGCSE R RH TPAWA  R  +

Sbjct: 135  ETPSLLKIQKLAGRGGGRLXSQLLGRLRQENRLNPGGGGCSEPRSRHCTPAWAT-RAKLR 193

 

Query: 3590 KKKKDHP 3570

             KK   P

Sbjct: 194  LKKXXXP 200

 

 

 Score = 52.3 bits (123), Expect(2) = 1e-033

 Identities = 26/35 (74%), Positives = 26/35 (74%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAG 3126

            GRRRLQ AEI PLHSSLGNKSE PSQKK      G

Sbjct: 70   GRRRLQXAEIAPLHSSLGNKSETPSQKKXXXAGRG 104

 

 

 Score = 51.9 bits (122), Expect = 6e-005

 Identities = 41/106 (38%), Positives = 49/106 (45%), Gaps = 3/106 (2%)

 Frame = +1

 

Query: 3556 GFSRCGWSFFFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPS-- 3729

            G S       F ETE RS       W  +   +  +    R   + LP   +   L + 

Sbjct: 488  GVSHRARXXXFFETEFRSCCPG---WSAVARSRLTATSASRVQAILLPQPPEXLGLQAPA 544

 

Query: 3730 -CPANFCILVETGVFTMLARLVLNSWLRVIRLPWPPRVLGLQA*ATAPG 3873

              P  F        FTMLARLV NS  +VI  P PP+VLGLQA ATAPG

Sbjct: 545  TTPGXFLYFXXRRGFTMLARLVSNSXPQVIHPPRPPKVLGLQAXATAPG 593

 

 

 Score = 51.9 bits (122), Expect(2) = 1e-021

 Identities = 21/24 (87%), Positives = 21/24 (87%)

 Frame = +2

 

Query: 3014 LEPGGGGCSEPRLCHCTPAWATRA 3085

            L PGGGGCSEPR  HCTPAWATRA

Sbjct: 167  LNPGGGGCSEPRSRHCTPAWATRA 190

 

 

 Score = 49.2 bits (115), Expect(2) = 6e-021

 Identities = 21/24 (87%), Positives = 23/24 (95%)

 Frame = -2

 

Query: 3103 FFETEPRSCCPGWSAMAQSRLTAT 3032

            FFETE RSCCPGWSA+A+SRLTAT

Sbjct: 498  FFETEFRSCCPGWSAVARSRLTAT 521

 

 

 Score = 46.5 bits (108), Expect(2) = 6e-019

 Identities = 21/36 (58%), Positives = 21/36 (58%)

 Frame = +3

 

Query: 3765 GFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRAR 3872

            GFHHVGQAGLELL SGDP              HRAR

Sbjct: 459  GFHHVGQAGLELLTSGDPPASASQSAGITGVSHRAR 494

 

 

 Score = 40.2 bits (92), Expect(2) = 2e-022

 Identities = 18/21 (85%), Positives = 19/21 (89%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLG 3043

            FFLRRS ALVAQAGVQW +LG

Sbjct: 299  FFLRRSFALVAQAGVQWRDLG 319

 

 

 Score = 36.4 bits (82), Expect(2) = 1e-018

 Identities = 18/20 (90%), Positives = 18/20 (90%)

 Frame = +3

 

Query: 3027 AEVAVSRDCAIALQPGQQER 3086

            AEVAVSRD A ALQPGQQER

Sbjct: 270  AEVAVSRDRATALQPGQQER 289

 

 

>gb|AAF56856.1| (AE003768) CG11877 gene product [Drosophila melanogaster]

            Length = 503

           

 Score =  140 bits (349), Expect = 1e-031

 Identities = 95/328 (28%), Positives = 159/328 (47%), Gaps = 7/328 (2%)

 Frame = +1

 

Query: 574  IMSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKL 753

            I + + ++E L+Q I    + +    E   + +  N +      ++ +K + ++ +   

Sbjct: 141  IKAKRKQLELLQQLISGTGQRLRVLGERRDELRRANAEKRKNLPKYPDKVKMLENYVLDR 200

 

Query: 754  GDLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPAXXXXXXXXXXXXX 933

             + +EK         + +    R  I +L + +FPI EV   +++              

Sbjct: 201  VEKIEKLRETHLGLLDSIKQAARRSIQQLVTYVFPIAEVV--LKEEQQRRASVERTEEAE 258

 

Query: 934  XXXKLAEARRTTYLSGRWVCDDHN-GDTSISITGPWISLPNNGDYSAYYSWVEEKK---- 1098

                LA+A+ T+Y+ G+WV       +    I GP  SLP NGDY+AY  W+ + K   

Sbjct: 259  TIAALADAKNTSYIRGKWVFHGSGISEVQYRIVGP--SLPANGDYTAYLDWLADNKDDVP 316

 

Query: 1099 -TTQGPDMEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTR 1275

              T          AY I  AL Y  QL  +LS  L+V LP K+   +FC + L++++F R

Sbjct: 317  KATANEITPSRFEAYRIVGALTYTAQLTQLLSFYLNVRLPHKIAYGDFCRKLLNEEQFRR 376

 

Query: 1276 AVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEV-RADLEESM 1452

             + +LN+NI+YL ++Q V L  L   HTL NL+ ++      LGR G  +V  A L +S+

Sbjct: 377  KISRLNSNIMYLAYTQQVKLRALIEQHTLENLLAILDLERSDLGRYGHLDVNNAPLMKSV 436

 

Query: 1453 EFVDPGVAGESDESGDERVSDEETDLGTDWENLPS 1557

            + +  G+     E+  E  S++E  L  DWE +PS

Sbjct: 437  DSLLIGI-----ETATESESEDENSLRMDWEAVPS 466

 

 

>sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 593

           

 Score =  108 bits (266), Expect(2) = 9e-031

 Identities = 52/69 (75%), Positives = 55/69 (79%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGSLEVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREA 2998

            RARWLTPVIPALWEAEAGGS EV S R A  TW NPVS ++ +  R WWR PVIPATREA

Sbjct: 2    RARWLTPVIPALWEAEAGGSPEVGSSRPAXPTWRNPVSTKNTKISRAWWRMPVIPATREA 61

 

Query: 2999 AAGESLEPG 3025

             AGESLEPG

Sbjct: 62   EAGESLEPG 70

 

 

 Score = 88.9 bits (217), Expect(2) = 6e-022

 Identities = 41/60 (68%), Positives = 44/60 (73%)

 Frame = -2

 

Query: 2983 WDYRRAPPHPVIFCTSSRNRVSPC*PGCSQTPDLK*SACLGLPKCRDYRREPPRPAGKFF 2804

            WDYR APP P  FC  SR+ VSPC  G S+TPDL+ SA LGLPKC DYRREPPRPA   F

Sbjct: 340  WDYRHAPPRPANFCIFSRDGVSPCWSGWSRTPDLRXSARLGLPKCWDYRREPPRPAXXXF 399

 

 

 Score = 83.5 bits (203), Expect(2) = 3e-027

 Identities = 40/62 (64%), Positives = 41/62 (65%)

 Frame = +1

 

Query: 3583 FFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVET 3762

            FFL       AQAGV WR L S QPP PGF+RF  LSLPSSWDYRH P  PANFCI   

Sbjct: 299  FFLRRSFALVAQAGVQWRDLGSPQPPPPGFKRFSCLSLPSSWDYRHAPPRPANFCIFSRD 358

 

Query: 3763 GV 3768

            GV

Sbjct: 359  GV 360

 

 

 Score = 80.0 bits (194), Expect(2) = 1e-018

 Identities = 41/73 (56%), Positives = 46/73 (62%)

 Frame = +1

 

Query: 2803 ERISQPGAVAHACNPXXXXXXXXXXXXXQEFESSLANMVKPCFC*KCRKLPGVVAHACNP 2982

            ++   PGAVAHACNP             +EFE+SL NM KP    K +  PGVVAHACNP

Sbjct: 195  KKXXXPGAVAHACNPSTLGGRGGRITXGREFETSLTNMEKPRLYXKYKNXPGVVAHACNP 254

 

Query: 2983 SYSGGCGGRIA*T 3021

            SYSGG G RIA T

Sbjct: 255  SYSGGXGRRIAXT 267

 

 

 Score = 80.0 bits (194), Expect(2) = 2e-022

 Identities = 45/68 (66%), Positives = 50/68 (73%)

 Frame = -1

 

Query: 3020 VQAIXXXXXXXXXXXQACATTPGNFLHF*QKQGFTMLARLLSNS*PQVIRLPRPPKVPGL 2841

            VQAI           QACATTPG FL+F  ++GF+ML RL+SNS PQVIR PRPPKV GL

Sbjct: 526  VQAILLPQPPEXLGLQACATTPGXFLYFXXRRGFSMLVRLVSNSRPQVIRPPRPPKVLGL 585

 

Query: 2840 QA*ATAPG 2817

            QA ATAPG

Sbjct: 586  QAXATAPG 593

 

 

 Score = 74.9 bits (181), Expect(2) = 8e-021

 Identities = 39/71 (54%), Positives = 50/71 (69%)

 Frame = +3

 

Query: 2745 AQILTADATLLCSGESTI*RKNFPAGRGGSRL*SRHFGRPRQADHLRSGV*EQPG*HGET 2924

            A+I    ++L    E+   +K   AGRGGSRL S+HFGRPR+ADHLRSGV +QP  HGET

Sbjct: 77   AEIAPLHSSLGNKSETPSQKKXXXAGRGGSRLXSQHFGRPRRADHLRSGVRDQPDQHGET 136

 

Query: 2925 LFLLEVQKITG 2957

              LL++QK+ G

Sbjct: 137  PSLLKIQKLAG 147

 

 

 Score = 67.5 bits (162), Expect(2) = 2e-015

 Identities = 36/53 (67%), Positives = 37/53 (68%)

 Frame = +2

 

Query: 3611 LPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGF 3769

            LPRLEC GAISA  N  L GS DS  SASRVAGI G  HHA+LIFVF    GF

Sbjct: 408  LPRLECNGAISAHRNLRLPGSSDSPASASRVAGITGMRHHARLIFVFLVETGF 460

 

 

 Score = 66.3 bits (159), Expect(2) = 4e-020

 Identities = 36/62 (58%), Positives = 44/62 (70%)

 Frame = -3

 

Query: 3768 NPRLYQNTKISWA*WQVPIIPATREAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQ 3589

            NP   +NTKIS A W++P+IPATREAE  ES EP R  L+ AE+AP HSSLG+ +    Q

Sbjct: 36   NPVSTKNTKISRAWWRMPVIPATREAEAGESLEPGRRRLRXAEIAPLHSSLGNKSETPSQ 95

 

Query: 3588 KK 3583

            KK

Sbjct: 96   KK 97

 

 

 Score = 65.2 bits (156), Expect(2) = 1e-018

 Identities = 38/69 (55%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

 Frame = -3

 

Query: 2991 RVAGITGVRHHTR*FSALLAETGFHHVSQAALKLLTXXXXXXXXXXXAGITGVSHRARLG 2812

            RVAGITG+RHH R     L ETGF HV QA L+L T           AGITGVSHRAR 

Sbjct: 437  RVAGITGMRHHARLIFVFLVETGFLHVGQAGLELPTSGDPPASASQSAGITGVSHRARXX 496

 

Query: 2811 NSF---FILCFP 2785

              F   F  C P

Sbjct: 497  XFFETEFRSCCP 508

 

 

 Score = 63.6 bits (152), Expect(2) = 3e-027

 Identities = 33/61 (54%), Positives = 37/61 (60%)

 Frame = +2

 

Query: 3743 FVFW*RRGFSPCWPGWS*TPGFG*SACLGLLGCWDCRPEPPRPAPYGFFYTAGISVLSAQ 3922

            F  + R G SPCW GWS TP    SA LGL  CWD R EPPRPA   FF   G+S+L  +

Sbjct: 352  FCIFSRDGVSPCWSGWSRTPDLRXSARLGLPKCWDYRREPPRPAXXXFF-XDGVSLLLPR 410

 

Query: 3923 L 3925

            L

Sbjct: 411  L 411

 

 

 Score = 60.9 bits (145), Expect = 1e-007

 Identities = 32/59 (54%), Positives = 40/59 (67%)

 Frame = -3

 

Query: 3912 KTEIPAV*KNP*GAGRGGSGLQSQHPRRPRQADHPKPGVQDQPGQHGENPRLYQNTKIS 3736

            K+E P+  K    AGRGGS L SQH  RPR+ADH + GV+DQP QHGE P L +  K++

Sbjct: 89   KSETPSQ-KKXXXAGRGGSRLXSQHFGRPRRADHLRSGVRDQPDQHGETPSLLKIQKLA 146

 

 

 Score = 60.5 bits (144), Expect = 2e-007

 Identities = 32/72 (44%), Positives = 40/72 (55%)

 Frame = -1

 

Query: 3947 GSPAINHEAEHLKQRSQQCRRTHKGPGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVK 3768

            G P   H       R++   +    PGAVA ACNPSTLGG+G RIT  +EF+TSL NM K

Sbjct: 175  GEPRSRHCTPAWATRAKLRLKKXXXPGAVAHACNPSTLGGRGGRITXGREFETSLTNMEK 234

 

Query: 3767 TPVSTKIQKLAG 3732

              +  K +   G

Sbjct: 235  PRLYXKYKNXPG 246

 

 

 Score = 58.9 bits (140), Expect = 5e-007

 Identities = 34/62 (54%), Positives = 36/62 (57%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF       CPGWS +A S L AT+ S VQAIL  QPPE LGL A A  P  FLYF   

Sbjct: 498  FFETEFRSCCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLYFXXRR 557

 

Query: 3765 GF 3770

            GF

Sbjct: 558  GF 559

 

 

 Score = 56.6 bits (134), Expect(2) = 4e-020

 Identities = 28/44 (63%), Positives = 29/44 (65%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSPEARSSRPAWPTW*KPPSLPKYK 3743

            GRARWL P IPA  EA+A GSPE  SSRPA PTW  P S    K

Sbjct: 1    GRARWLTPVIPALWEAEAGGSPEVGSSRPAXPTWRNPVSTKNTK 44

 

 

 Score = 56.2 bits (133), Expect = 3e-006

 Identities = 33/67 (49%), Positives = 35/67 (51%)

 Frame = -1

 

Query: 3770 KTPVSTKIQKLAGHDGRCL*SQXXXXXXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVS 3591

            +TP   KIQKLAG  G CL SQ           NPG GGC E R RH TPAWA  R  +

Sbjct: 135  ETPSLLKIQKLAGRGGACLXSQLLGRLRQENRLNPGGGGCGEPRSRHCTPAWAT-RAKLR 193

 

Query: 3590 KKKKDHP 3570

             KK   P

Sbjct: 194  LKKXXXP 200

 

 

 Score = 54.7 bits (129), Expect = 9e-006

 Identities = 41/106 (38%), Positives = 50/106 (46%), Gaps = 3/106 (2%)

 Frame = +1

 

Query: 3556 GFSRCGWSFFFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSC- 3732

            G S       F ETE RS       W  +   +  +    R   + LP   +   L +C

Sbjct: 488  GVSHRARXXXFFETEFRSCCPG---WSAMARSRLTATSASRVQAILLPQPPEXLGLQACA 544

 

Query: 3733 --PANFCILVETGVFTMLARLVLNSWLRVIRLPWPPRVLGLQA*ATAPG 3873

              P  F        F+ML RLV NS  +VIR P PP+VLGLQA ATAPG

Sbjct: 545  TTPGXFLYFXXRRGFSMLVRLVSNSRPQVIRPPRPPKVLGLQAXATAPG 593

 

 

 Score = 53.9 bits (127), Expect = 2e-005

 Identities = 31/53 (58%), Positives = 34/53 (63%)

 Frame = -2

 

Query: 3769 KPPSLPKYKN*LGMMAGAYNPSYSGG*DGRIA*TQEMVVAASGDGATTLQPGQ 3611

            KP    KYKN  G++A A NPSYSGG   RIA T+E  VA S D A  LQPGQ

Sbjct: 234  KPRLYXKYKNXPGVVAHACNPSYSGGXGRRIAXTREAEVAVSRDRAIALQPGQ 286

 

 

 Score = 52.7 bits (124), Expect(2) = 1e-018

 Identities = 25/35 (71%), Positives = 25/35 (71%)

 Frame = -1

 

Query: 3125 PAEGNSFFF*DGASLLLPRLECNGTISAHCNLRLP 3021

            P      FF DG SLLLPRLECNG ISAH NLRLP

Sbjct: 392  PRPAXXXFFXDGVSLLLPRLECNGAISAHRNLRLP 426

 

 

 Score = 50.8 bits (119), Expect(2) = 9e-031

 Identities = 25/35 (71%), Positives = 26/35 (73%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAG 3126

            GRRRL+ AEI PLHSSLGNKSE PSQKK      G

Sbjct: 70   GRRRLRXAEIAPLHSSLGNKSETPSQKKXXXAGRG 104

 

 

 Score = 50.8 bits (119), Expect(2) = 2e-022

 Identities = 22/24 (91%), Positives = 23/24 (95%)

 Frame = -2

 

Query: 3103 FFETEPRSCCPGWSAMAQSRLTAT 3032

            FFETE RSCCPGWSAMA+SRLTAT

Sbjct: 498  FFETEFRSCCPGWSAMARSRLTAT 521

 

 

 Score = 50.4 bits (118), Expect(2) = 8e-021

 Identities = 20/24 (83%), Positives = 20/24 (83%)

 Frame = +2

 

Query: 3014 LEPGGGGCSEPRLCHCTPAWATRA 3085

            L PGGGGC EPR  HCTPAWATRA

Sbjct: 167  LNPGGGGCGEPRSRHCTPAWATRA 190

 

 

 Score = 40.2 bits (92), Expect(2) = 6e-022

 Identities = 18/21 (85%), Positives = 19/21 (89%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLG 3043

            FFLRRS ALVAQAGVQW +LG

Sbjct: 299  FFLRRSFALVAQAGVQWRDLG 319

 

 

 Score = 39.5 bits (90), Expect(2) = 2e-015

 Identities = 19/36 (52%), Positives = 19/36 (52%)

 Frame = +3

 

Query: 3765 GFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRAR 3872

            GF HVGQAGLEL  SGDP              HRAR

Sbjct: 459  GFLHVGQAGLELPTSGDPPASASQSAGITGVSHRAR 494

 

 

 Score = 38.3 bits (87), Expect(2) = 1e-018

 Identities = 19/20 (95%), Positives = 19/20 (95%)

 Frame = +3

 

Query: 3027 AEVAVSRDCAIALQPGQQER 3086

            AEVAVSRD AIALQPGQQER

Sbjct: 270  AEVAVSRDRAIALQPGQQER 289

 

 

>sp|P39188|ALU1_HUMAN ALU SUBFAMILY J SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 591

           

 Score =  109 bits (269), Expect(2) = 2e-025

 Identities = 51/69 (73%), Positives = 55/69 (78%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGSLEVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREA 2998

            RARWLTPVIPALWEAEAGGSLE RS R AW T  NPVS ++ +  R WWR PV+PATREA

Sbjct: 2    RARWLTPVIPALWEAEAGGSLEPRSSRPAWATXXNPVSTKNTKISRAWWRAPVVPATREA 61

 

Query: 2999 AAGESLEPG 3025

             AG SLEPG

Sbjct: 62   EAGGSLEPG 70

 

 

 Score = 84.3 bits (205), Expect(2) = 2e-015

 Identities = 39/56 (69%), Positives = 42/56 (74%)

 Frame = -2

 

Query: 2983 WDYRRAPPHPVIFCTSSRNRVSPC*PGCSQTPDLK*SACLGLPKCRDYRREPPRPA 2816

            WDYRRAPP P  FC   R+ VS C PG S+TP LK S+ LGLPKC DYRREPPRPA

Sbjct: 536  WDYRRAPPRPANFCIFCRDGVSLCCPGWSRTPGLKXSSRLGLPKCWDYRREPPRPA 591

 

 

 Score = 79.6 bits (193), Expect = 3e-013

 Identities = 49/101 (48%), Positives = 60/101 (58%), Gaps = 2/101 (1%)

 Frame = +1

 

Query: 2803 ERISQPGAVAHACNPXXXXXXXXXXXXXQEFESSLANMVKPCFC*KCRKLPGVVAHACNP 2982

            ++   PGAVAHACNP             QEFE+SL N+VKP    K +  PGVVA AC+P

Sbjct: 194  KKXXXPGAVAHACNPSTLGGRGGRITXAQEFETSLGNIVKPRLYKKYKNXPGVVARACSP 253

 

Query: 2983 SYSGGCGGRIA*TGRRRLQ*AEIVPLHSSL--GNKSEAPSQKK 3105

            SYSGG G RIA    R ++ A      ++L  G +SE  SQKK

Sbjct: 254  SYSGGXGRRIA--XAREVEAAVSRDRATALQPGRQSETLSQKK 294

 

 

 Score = 78.4 bits (190), Expect(2) = 7e-023

 Identities = 39/61 (63%), Positives = 40/61 (64%)

 Frame = +1

 

Query: 3586 FLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVETG 3765

            F ET SRS AQAGV WR   SLQP  PG +R   LSLPSSWDYR  P  PANFCI    G

Sbjct: 496  FFETGSRSVAQAGVQWRDHGSLQPRPPGLKRSSCLSLPSSWDYRRAPPRPANFCIFCRDG 555

 

Query: 3766 V 3768

            V

Sbjct: 556  V 556

 

 

 Score = 69.9 bits (168), Expect(2) = 7e-014

 Identities = 37/52 (71%), Positives = 41/52 (78%)

 Frame = -1

 

Query: 2972 ACATTPGNFLHF*QKQGFTMLARLLSNS*PQVIRLPRPPKVPGLQA*ATAPG 2817

            A ATTPG FL+F  ++GFTML RL+SNS  QVI  PRPPKV GLQA ATAPG

Sbjct: 441  ARATTPGXFLYFLXRRGFTMLPRLVSNSWAQVILPPRPPKVLGLQAXATAPG 492

 

 

 Score = 68.7 bits (165), Expect = 5e-010

 Identities = 35/59 (59%), Positives = 40/59 (67%)

 Frame = +2

 

Query: 3593 RRSLAQLPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGF 3769

            R+ LA  PRLEC GAI+A C+  L GS D   SASRVAG  G  HHA+LIFVF+   GF

Sbjct: 301  RQGLALSPRLECSGAITAHCSLDLPGSSDPPASASRVAGTTGARHHARLIFVFFVETGF 359

 

 

 Score = 66.0 bits (158), Expect = 4e-009

 Identities = 41/101 (40%), Positives = 46/101 (44%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLGXXXXXXXXXXXXXXXXSRVAGITGVRHHTR*FSALLAET 2926

            FFLR+ LAL  +                         SRVAG TG RHH R       ET

Sbjct: 298  FFLRQGLALSPRLECSGAITAHCSLDLPGSSDPPASASRVAGTTGARHHARLIFVFFVET 357

 

Query: 2925 GFHHVSQAALKLLTXXXXXXXXXXXAGITGVSHRARLGNSF 2803

            GFH+V+QA L+LL            AGITGVSHRAR    F

Sbjct: 358  GFHYVAQAGLELLGSSDPPASASQSAGITGVSHRARXXXFF 398

 

 

 Score = 65.2 bits (156), Expect(2) = 7e-016

 Identities = 31/52 (59%), Positives = 38/52 (72%)

 Frame = +3

 

Query: 2802 RKNFPAGRGGSRL*SRHFGRPRQADHLRSGV*EQPG*HGETLFLLEVQKITG 2957

            +K   AGRGGSRL S+HFGRPR+ DHL  GV +QPG H ET  L ++QK+ G

Sbjct: 95   KKXXXAGRGGSRLXSQHFGRPRREDHLSPGVRDQPGQHSETPSLQKIQKLAG 146

 

 

 Score = 62.1 bits (148), Expect(2) = 2e-017

 Identities = 35/61 (57%), Positives = 41/61 (66%)

 Frame = -3

 

Query: 3768 NPRLYQNTKISWA*WQVPIIPATREAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQ 3589

            NP   +NTKIS A W+ P++PATREAE   S EP R  LQ A +AP HSSLG  AR  L+

Sbjct: 36   NPVSTKNTKISRAWWRAPVVPATREAEAGGSLEPGRSRLQXAVIAPLHSSLGDRARPCLK 95

 

Query: 3588 K 3586

            K

Sbjct: 96   K 96

 

 

 Score = 60.9 bits (145), Expect = 1e-007

 Identities = 29/47 (61%), Positives = 35/47 (73%)

 Frame = -1

 

Query: 3872 PGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVKTPVSTKIQKLAG 3732

            PGAVA ACNPSTLGG+G RIT +QEF+TSL N+VK  +  K +   G

Sbjct: 199  PGAVAHACNPSTLGGRGGRITXAQEFETSLGNIVKPRLYKKYKNXPG 245

 

 

 Score = 60.9 bits (145), Expect = 1e-007

 Identities = 28/46 (60%), Positives = 33/46 (70%)

 Frame = -3

 

Query: 3873 AGRGGSGLQSQHPRRPRQADHPKPGVQDQPGQHGENPRLYQNTKIS 3736

            AGRGGS L SQH  RPR+ DH  PGV+DQPGQH E P L +  K++

Sbjct: 100  AGRGGSRLXSQHFGRPRREDHLSPGVRDQPGQHSETPSLQKIQKLA 145

 

 

 Score = 60.5 bits (144), Expect = 2e-007

 Identities = 36/62 (58%), Positives = 37/62 (59%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF D VSL  PGWS VA S L A + S  QAIL  QPPE LGL A A  P  FLYF   

Sbjct: 397  FFXDRVSLCRPGWSAVARSRLTAASTSRAQAILLPQPPEXLGLQARATTPGXFLYFLXRR 456

 

Query: 3765 GF 3770

            GF

Sbjct: 457  GF 458

 

 

 Score = 59.7 bits (142), Expect = 3e-007

 Identities = 33/62 (53%), Positives = 35/62 (56%)

 Frame = -1

 

Query: 3770 KTPVSTKIQKLAGHDGRCL*SQXXXXXXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVS 3591

            +TP   KIQKLAG  G  L SQ           +PG  GCSE   RH TPAWA ERD VS

Sbjct: 134  ETPSLQKIQKLAGRGGARLXSQLLGRLRQEDRLSPGGRGCSEPXSRHCTPAWATERDPVS 193

 

Query: 3590 KK 3585

            KK

Sbjct: 194  KK 195

 

 

 Score = 55.4 bits (131), Expect = 5e-006

 Identities = 32/59 (54%), Positives = 38/59 (64%)

 Frame = -2

 

Query: 3769 KPPSLPKYKN*LGMMAGAYNPSYSGG*DGRIA*TQEMVVAASGDGATTLQPGQLSETPS 3593

            KP    KYKN  G++A A +PSYSGG   RIA  +E+  A S D AT LQPG+ SET S

Sbjct: 233  KPRLYKKYKNXPGVVARACSPSYSGGXGRRIAXAREVEAAVSRDRATALQPGRQSETLS 291

 

 

 Score = 53.9 bits (127), Expect = 2e-005

 Identities = 28/47 (59%), Positives = 31/47 (65%)

 Frame = +1

 

Query: 3733 PANFCILVETGVFTMLARLVLNSWLRVIRLPWPPRVLGLQA*ATAPG 3873

            P  F   +    FTML RLV NSW +VI  P PP+VLGLQA ATAPG

Sbjct: 446  PGXFLYFLXRRGFTMLPRLVSNSWAQVILPPRPPKVLGLQAXATAPG 492

 

 

 Score = 53.9 bits (127), Expect(2) = 7e-023

 Identities = 26/44 (59%), Positives = 28/44 (63%)

 Frame = +2

 

Query: 3743 FVFW*RRGFSPCWPGWS*TPGFG*SACLGLLGCWDCRPEPPRPA 3874

            F  + R G S C PGWS TPG   S+ LGL  CWD R EPPRPA

Sbjct: 548  FCIFCRDGVSLCCPGWSRTPGLKXSSRLGLPKCWDYRREPPRPA 591

 

 

 Score = 51.9 bits (122), Expect(2) = 2e-017

 Identities = 27/44 (61%), Positives = 28/44 (63%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSPEARSSRPAWPTW*KPPSLPKYK 3743

            GRARWL P IPA  EA+A GS E RSSRPAW T   P S    K

Sbjct: 1    GRARWLTPVIPALWEAEAGGSLEPRSSRPAWATXXNPVSTKNTK 44

 

 

 Score = 43.4 bits (100), Expect(2) = 7e-016

 Identities = 17/24 (70%), Positives = 18/24 (74%)

 Frame = +2

 

Query: 3008 ESLEPGGGGCSEPRLCHCTPAWAT 3079

            + L PGG GCSEP   HCTPAWAT

Sbjct: 164  DRLSPGGRGCSEPXSRHCTPAWAT 187

 

 

 Score = 32.1 bits (71), Expect(2) = 7e-014

 Identities = 14/23 (60%), Positives = 16/23 (68%)

 Frame = -2

 

Query: 3103 FFETEPRSCCPGWSAMAQSRLTA 3035

            FF      C PGWSA+A+SRLTA

Sbjct: 397  FFXDRVSLCRPGWSAVARSRLTA 419

 

 

 Score = 31.7 bits (70), Expect(2) = 2e-025

 Identities = 18/35 (51%), Positives = 21/35 (59%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAG 3126

            GR RLQ A I PLHSSLG+++  P  KK      G

Sbjct: 70   GRSRLQXAVIAPLHSSLGDRAR-PCLKKXXXAGRG 103

 

 

 Score = 22.7 bits (47), Expect(2) = 2e-015

 Identities = 9/12 (75%), Positives = 10/12 (83%)

 Frame = -3

 

Query: 3078 VAQAGVQWHNLG 3043

            VAQAGVQW + G

Sbjct: 504  VAQAGVQWRDHG 515

 

 

>sp|P39192|ALU5_HUMAN ALU SUBFAMILY SC SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 585

           

 Score = 99.1 bits (243), Expect = 4e-019

 Identities = 55/86 (63%), Positives = 57/86 (65%), Gaps = 4/86 (4%)

 Frame = +1

 

Query: 3616 QAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVETGVFTMLARLVL 3795

            QAGV WR L SLQPP PGF+RF  LSLPSSWDYR  P  PANFCI    GV        

Sbjct: 403  QAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRAPPRPANFCIFSRDGVSPCWP---- 458

 

Query: 3796 NSWLR----VIRLPWPPRVLGLQA*ATAPG 3873

              W R    VIR P PP+VLGLQA ATAPG

Sbjct: 459  -GWSRSLDLVIRPPRPPKVLGLQAXATAPG 487

 

 

 Score = 88.5 bits (216), Expect = 6e-016

 Identities = 54/101 (53%), Positives = 64/101 (62%), Gaps = 1/101 (0%)

 Frame = -3

 

Query: 3873 AGRGGSGLQSQHPRRPRQADHPKPGVQDQPG-QHGENPRLYQNTKISWA*WQVPIIPATR 3697

            AGRGGS L SQH  RPR+ADH     + +P      NP   +NTKISWA W+ P++PATR

Sbjct: 99   AGRGGSRLXSQHFGRPRRADHEVK--RSRPSWPTWXNPVSTKNTKISWAWWRAPVVPATR 156

 

Query: 3696 EAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQKKKRPP 3571

            EAE  ES EP R  LQ AE+AP HSSL +  R  + KK   P

Sbjct: 157  EAEAGESLEPGRRRLQXAEIAPLHSSLAT-ERDSVSKKXXXP 197

 

 

 Score = 85.8 bits (209), Expect = 4e-015

 Identities = 50/96 (52%), Positives = 55/96 (57%)

 Frame = -1

 

Query: 3872 PGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVKTPVSTKIQKLAGHDGRCL*SQXXXX 3693

            PGAVA ACNPSTLGG+G RITRS++ +       +TP   KIQKLAG  G  L SQ   

Sbjct: 197  PGAVAHACNPSTLGGRGGRITRSRD-RDHPGQHGETPSLLKIQKLAGRGGARLXSQLLGR 255

 

Query: 3692 XXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVSKK 3585

                   NPG GGCSE R RH TPAW        KK

Sbjct: 256  LRQENRLNPGGGGCSEPRSRHCTPAWRQSETPSQKK 291

 

 

 Score = 83.9 bits (204), Expect = 1e-014

 Identities = 51/86 (59%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

 Frame = +2

 

Query: 3617 RLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGFSPC-WPGWS 3793

            RLEC GAISA CN  L GS DS  SASRVAG  G  HHAQLIFVF    GF      G 

Sbjct: 501  RLECSGAISAHCNLRLPGSSDSPASASRVAGTTGARHHAQLIFVFLVETGFHHVGQDGLD 560

 

Query: 3794 *TPGFG*SACLGLLGCWDCRPEPPRPA 3874

                   SA LGL  CWD R EPPRPA

Sbjct: 561  LLTSX--SARLGLPKCWDYRREPPRPA 585

 

 

 Score = 74.5 bits (180), Expect = 1e-011

 Identities = 46/87 (52%), Positives = 52/87 (58%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSPEARSSRPAWPTW*KPPSLPKYKN*LGMMAGAYNPSYSG 3695

            GRARWL P IPA  EA+A GS   +          KP    KYKN LG++A A +PSYSG

Sbjct: 1    GRARWLTPVIPALWEAEAGGS-RGQEIETILANMVKPRLYXKYKNXLGVVARACSPSYSG 59

 

Query: 3694 G*DGRIA*TQEMVVAASGDGATTLQPG 3614

            G   RIA T+E  VA S D AT LQPG

Sbjct: 60   GXGRRIAXTREAEVAVSRDRATALQPG 86

 

 

 Score = 67.1 bits (161), Expect(3) = 2e-021

 Identities = 29/48 (60%), Positives = 35/48 (72%)

 Frame = +2

 

Query: 2882 EVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREAAAGESLEPG 3025

            EV+  R +W TW NPVS ++ +    WWR PV+PATREA AGESLEPG

Sbjct: 120  EVKRSRPSWPTWXNPVSTKNTKISWAWWRAPVVPATREAEAGESLEPG 167

 

 

 Score = 67.1 bits (161), Expect = 2e-009

 Identities = 29/33 (87%), Positives = 30/33 (90%)

 Frame = -1

 

Query: 353 GGSRL*SQHFGRPRRADQEVRRSRPSWPTW*NP 255

           GGSRL SQHFGRPRRAD EV+RSRPSWPTW NP

Sbjct: 102 GGSRLXSQHFGRPRRADHEVKRSRPSWPTWXNP 134

 

 

 Score = 66.3 bits (159), Expect = 3e-009

 Identities = 30/33 (90%), Positives = 30/33 (90%)

 Frame = +1

 

Query: 256 GFHHVGQDGLDLLTS*SALLGLPKCCDYRREPP 354

           GFHHVGQDGLDLLTS SA LGLPKC DYRREPP

Sbjct: 550 GFHHVGQDGLDLLTSXSARLGLPKCWDYRREPP 582

 

 

 Score = 64.8 bits (155), Expect = 8e-009

 Identities = 28/36 (77%), Positives = 32/36 (88%)

 Frame = -2

 

Query: 355 AVAHACNRSTLGGQGGQIKRLGDQDHPGQHGETPNL 248

           AVAHACN STLGG+GG+I R  D+DHPGQHGETP+L

Sbjct: 199 AVAHACNPSTLGGRGGRITRSRDRDHPGQHGETPSL 234

 

 

 Score = 64.4 bits (154), Expect = 1e-008

 Identities = 43/97 (44%), Positives = 50/97 (51%)

 Frame = +3

 

Query: 3582 FFFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRD 3761

            FF    ++LS PGWS VA S L AT+ S VQAIL  QPPE LGL A A  PS FLYF  

Sbjct: 295  FFLRRSLALS-PGWSAVARSRLTATSASRVQAILLPQPPEXLGLQARATTPSXFLYFXXR 353

 

Query: 3762 GGFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRAR 3872

             GF  + +  + +    DP              HRAR

Sbjct: 354  RGFTMLARM-VSISXPRDPPASASQSAGITGVSHRAR 389

 

 

 Score = 57.4 bits (136), Expect = 1e-006

 Identities = 27/33 (81%), Positives = 29/33 (87%)

 Frame = -3

 

Query: 354 RWLTPVIAALWEAKEGRSRG*EIKTILANMVKP 256

           RWLTPVI ALWEA+ G SRG EI+TILANMVKP

Sbjct: 4   RWLTPVIPALWEAEAGGSRGQEIETILANMVKP 36

 

 

 Score = 52.7 bits (124), Expect = 4e-005

 Identities = 28/41 (68%), Positives = 29/41 (70%)

 Frame = +2

 

Query: 254 RGFTMLARMVLIS*PLDLPSLASQSAAITGVSHRTGLISLF 376

           RGFTMLARMV IS P D P+ ASQSA ITGVSHR      F

Sbjct: 354 RGFTMLARMVSISXPRDPPASASQSAGITGVSHRARXXXFF 394

 

 

 Score = 52.3 bits (123), Expect(3) = 3e-016

 Identities = 28/45 (62%), Positives = 31/45 (68%)

 Frame = +1

 

Query: 2887 QEFESSLANMVKPCFC*KCRKLPGVVAHACNPSYSGGCGGRIA*T 3021

            QE E+ LANMVKP    K +   GVVA AC+PSYSGG G RIA T

Sbjct: 24   QEIETILANMVKPRLYXKYKNXLGVVARACSPSYSGGXGRRIAXT 68

 

 

 Score = 51.2 bits (120), Expect(2) = 2e-006

 Identities = 22/34 (64%), Positives = 25/34 (72%)

 Frame = -2

 

Query: 2983 WDYRRAPPHPVIFCTSSRNRVSPC*PGCSQTPDL 2882

            WDYRRAPP P  FC  SR+ VSPC PG S++ DL

Sbjct: 433  WDYRRAPPRPANFCIFSRDGVSPCWPGWSRSLDL 466

 

 

 Score = 47.3 bits (110), Expect(3) = 6e-016

 Identities = 22/36 (61%), Positives = 23/36 (63%)

 Frame = -3

 

Query: 2991 RVAGITGVRHHTR*FSALLAETGFHHVSQAALKLLT 2884

            RVAG TG RHH +     L ETGFHHV Q  L LLT

Sbjct: 528  RVAGTTGARHHAQLIFVFLVETGFHHVGQDGLDLLT 563

 

 

 Score = 46.9 bits (109), Expect(3) = 3e-016

 Identities = 20/20 (100%), Positives = 20/20 (100%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGS 2878

            RARWLTPVIPALWEAEAGGS

Sbjct: 2    RARWLTPVIPALWEAEAGGS 21

 

 

 Score = 44.9 bits (104), Expect(2) = 6e-006

 Identities = 17/20 (85%), Positives = 17/20 (85%)

 Frame = +2

 

Query: 3014 LEPGGGGCSEPRLCHCTPAW 3073

            L PGGGGCSEPR  HCTPAW

Sbjct: 262  LNPGGGGCSEPRSRHCTPAW 281

 

 

 Score = 43.4 bits (100), Expect(3) = 2e-021

 Identities = 19/26 (73%), Positives = 22/26 (84%)

 Frame = +3

 

Query: 2802 RKNFPAGRGGSRL*SRHFGRPRQADH 2879

            +K   AGRGGSRL S+HFGRPR+ADH

Sbjct: 94   KKXXXAGRGGSRLXSQHFGRPRRADH 119

 

 

 Score = 41.4 bits (95), Expect(3) = 6e-016

 Identities = 18/20 (90%), Positives = 18/20 (90%)

 Frame = -2

 

Query: 2875 SACLGLPKCRDYRREPPRPA 2816

            SA LGLPKC DYRREPPRPA

Sbjct: 566  SARLGLPKCWDYRREPPRPA 585

 

 

 Score = 39.9 bits (91), Expect(3) = 6e-016

 Identities = 20/34 (58%), Positives = 23/34 (66%)

 Frame = -1

 

Query: 3122 AEGNSFFF*DGASLLLPRLECNGTISAHCNLRLP 3021

            A G   FF +  S  + RLEC+G ISAHCNLRLP

Sbjct: 485  APGXXXFF-ETESRSVARLECSGAISAHCNLRLP 517

 

 

 Score = 37.9 bits (86), Expect(3) = 5e-006

 Identities = 24/47 (51%), Positives = 30/47 (63%)

 Frame = -1

 

Query: 3020 VQAIXXXXXXXXXXXQACATTPGNFLHF*QKQGFTMLARLLSNS*PQ 2880

            VQAI           QA ATTP  FL+F  ++GFTMLAR++S S P+

Sbjct: 323  VQAILLPQPPEXLGLQARATTPSXFLYFXXRRGFTMLARMVSISXPR 369

 

 

 Score = 37.1 bits (84), Expect(3) = 2e-021

 Identities = 21/37 (56%), Positives = 24/37 (64%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAGDH 3132

            GRRRLQ AEI PLHSSL  + ++ S KK   P A  H

Sbjct: 167  GRRRLQXAEIAPLHSSLATERDSVS-KKXXXPGAVAH 202

 

 

 Score = 31.3 bits (69), Expect(3) = 5e-006

 Identities = 14/24 (58%), Positives = 17/24 (70%)

 Frame = -2

 

Query: 3103 FFETEPRSCCPGWSAMAQSRLTAT 3032

            FF     +  PGWSA+A+SRLTAT

Sbjct: 295  FFLRRSLALSPGWSAVARSRLTAT 318

 

 

 Score = 30.5 bits (67), Expect(3) = 3e-016

 Identities = 15/20 (75%), Positives = 16/20 (80%)

 Frame = +3

 

Query: 3027 AEVAVSRDCAIALQPGQQER 3086

            AEVAVSRD A ALQPG + R

Sbjct: 71   AEVAVSRDRATALQPGDRAR 90

 

 

 Score = 29.7 bits (65), Expect(2) = 6e-006

 Identities = 19/46 (41%), Positives = 22/46 (47%)

 Frame = +3

 

Query: 2820 GRGGSRL*SRHFGRPRQADHLRSGV*EQPG*HGETLFLLEVQKITG 2957

            GRGG         R R  DH        PG HGET  LL++QK+ G

Sbjct: 211  GRGG------RITRSRDRDH--------PGQHGETPSLLKIQKLAG 242

 

 

 Score = 25.1 bits (53), Expect(2) = 2e-006

 Identities = 10/20 (50%), Positives = 13/20 (65%)

 Frame = -3

 

Query: 3102 FLRRSLALVAQAGVQWHNLG 3043

            F    ++L  QAGVQW +LG

Sbjct: 393  FFXDGVSLCRQAGVQWRDLG 412

 

 

 Score = 24.7 bits (52), Expect(3) = 5e-006

 Identities = 11/15 (73%), Positives = 11/15 (73%)

 Frame = -3

 

Query: 2847 GITGVSHRARLGNSF 2803

            GITGVSHRAR    F

Sbjct: 380  GITGVSHRARXXXFF 394

 

 

>sp|P39189|ALU2_HUMAN ALU SUBFAMILY SB SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 587

           

 Score =  106 bits (263), Expect = 2e-021

 Identities = 63/106 (59%), Positives = 64/106 (59%), Gaps = 4/106 (3%)

 Frame = +1

 

Query: 3556 GFSRCGWSFFFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCP 3735

            G S       F ETESRS AQAGV WR L SLQ P PGF  F  LSLPSSWDYR  P  P

Sbjct: 483  GVSHRARXXXFFETESRSVAQAGVQWRDLGSLQAPPPGFTPFSCLSLPSSWDYRRPPPRP 542

 

Query: 3736 ANFCILVETGVFTMLARLVLNSWLR----VIRLPWPPRVLGLQA*ATAPG 3873

            ANFCI    GV           W R    VIR P PP+VLGLQA ATAPG

Sbjct: 543  ANFCIFSRDGVSPCXP-----GWSRSPDLVIRPPRPPKVLGLQAXATAPG 587

 

 

 Score = 96.3 bits (236), Expect = 3e-018

 Identities = 56/96 (58%), Positives = 60/96 (62%)

 Frame = -1

 

Query: 3872 PGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVKTPVSTKIQKLAGHDGRCL*SQXXXX 3693

            PGAVA ACNPSTLGG+G RITRS + +       +TP   KIQKLAG  G  L SQ   

Sbjct: 198  PGAVAHACNPSTLGGRGGRITRSGD-RDHPGXHGETPSLLKIQKLAGRGGGRLXSQLLGR 256

 

Query: 3692 XXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVSKK 3585

                   NPG G CSE R RH TPAWA ERDSVSKK

Sbjct: 257  LRQENGVNPGGGACSEPRSRHCTPAWATERDSVSKK 292

 

 

 Score = 92.4 bits (226), Expect = 4e-017

 Identities = 56/100 (56%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

 Frame = -3

 

Query: 3873 AGRGGSGLQSQHPRRPRQADHPKPGVQDQPGQHGE-NPRLYQNTKISWA*WQVPIIPATR 3697

            AGRGGS L SQH  RPR+ADH     + +P      NP   +NTKIS A W+ P++PATR

Sbjct: 100  AGRGGSRLXSQHFGRPRRADHEVR--RSRPSWLTRXNPVSTKNTKISRAWWRAPVVPATR 157

 

Query: 3696 EAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQKKKRP 3574

            EAE  E  EP R  LQ AE+AP HSSLG  ARLRL+K   P

Sbjct: 158  EAEAGEWREPGRRSLQXAEIAPLHSSLGDRARLRLKKXXXP 198

 

 

 Score = 89.3 bits (218), Expect = 3e-016

 Identities = 56/99 (56%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

 Frame = +2

 

Query: 3593 RRSLAQLPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGF- 3769

            RRSLA  PRLEC GAISA C   L GS  S  SASRVAG  G  HHA+LIFVF    GF

Sbjct: 299  RRSLALSPRLECSGAISAHCKLRLPGSRHSPASASRVAGTTGARHHARLIFVFLVETGFH 358

 

Query: 3770 SPCWPGWS*TPGFG*SACLGLLGCWDCRPEPPRPAPYGFF 3889

                 G         SA LGL  CWD R EPPRPA   FF

Sbjct: 359  RVSQDGLDLLTSX--SARLGLPKCWDYRREPPRPAXXXFF 396

 

 

 Score = 81.5 bits (198), Expect = 7e-014

 Identities = 49/94 (52%), Positives = 58/94 (61%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSPEARSSRPAWPTW*KPPSLPKYKN*LGMMAGAYNPSYSG 3695

            GRARWL P IPA  EA+A GS   +          KP    KYKN  G++AGA +PSYSG

Sbjct: 1    GRARWLTPVIPALWEAEAGGS-RGQEIETILANTVKPRLYXKYKNXPGVVAGACSPSYSG 59

 

Query: 3694 G*DGRIA*TQEMVVAASGDGATTLQPGQLSETPS 3593

            G   R+A T+E  +A S D AT LQPG+ SETPS

Sbjct: 60   GXGRRMAXTREAELAVSRDRATALQPGRQSETPS 93

 

 

 Score = 72.2 bits (174), Expect = 5e-011

 Identities = 44/96 (45%), Positives = 50/96 (51%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF DGVSL  PGWS VA S L A++ S V AIL  QPPE LGL APA  P  FLYF   

Sbjct: 395  FFXDGVSLCRPGWSAVARSRLTASSASRVHAILLPQPPEXLGLQAPATTPGXFLYFXXRR 454

 

Query: 3765 GFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRAR 3872

            GF  + +  + +    DP              HRAR

Sbjct: 455  GFTVLARM-VSISXPRDPPASASQSAGITGVSHRAR 489

 

 

 Score = 65.6 bits (157), Expect = 5e-009

 Identities = 28/36 (77%), Positives = 32/36 (88%)

 Frame = -2

 

Query: 355 AVAHACNRSTLGGQGGQIKRLGDQDHPGQHGETPNL 248

           AVAHACN STLGG+GG+I R GD+DHPG HGETP+L

Sbjct: 200 AVAHACNPSTLGGRGGRITRSGDRDHPGXHGETPSL 235

 

 

 Score = 63.6 bits (152), Expect(3) = 5e-020

 Identities = 29/48 (60%), Positives = 34/48 (70%)

 Frame = +2

 

Query: 2882 EVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREAAAGESLEPG 3025

            EVR  R +WLT  NPVS ++ +  R WWR PV+PATREA AGE  EPG

Sbjct: 121  EVRRSRPSWLTRXNPVSTKNTKISRAWWRAPVVPATREAEAGEWREPG 168

 

 

 Score = 61.7 bits (147), Expect(2) = 7e-016

 Identities = 37/80 (46%), Positives = 43/80 (53%)

 Frame = +1

 

Query: 2887 QEFESSLANMVKPCFC*KCRKLPGVVAHACNPSYSGGCGGRIA*TGRRRLQ*AEIVPLHS 3066

            QE E+ LAN VKP    K +  PGVVA AC+PSYSGG G R+A T    L  +      

Sbjct: 24   QEIETILANTVKPRLYXKYKNXPGVVAGACSPSYSGGXGRRMAXTREAELAVSRDRATAL 83

 

Query: 3067 SLGNKSEAPSQKKKEFPSAG 3126

              G +SE PSQKK      G

Sbjct: 84   QPGRQSETPSQKKXXXAGRG 103

 

 

 Score = 60.9 bits (145), Expect = 1e-007

 Identities = 28/33 (84%), Positives = 28/33 (84%)

 Frame = +1

 

Query: 256 GFHHVGQDGLDLLTS*SALLGLPKCCDYRREPP 354

           GFH V QDGLDLLTS SA LGLPKC DYRREPP

Sbjct: 356 GFHRVSQDGLDLLTSXSARLGLPKCWDYRREPP 388

 

 

 Score = 60.5 bits (144), Expect = 2e-007

 Identities = 30/42 (71%), Positives = 31/42 (73%)

 Frame = -1

 

Query: 380 QRKEKLGQCGGSRL*SQHFGRPRRADQEVRRSRPSWPTW*NP 255

           Q+K      GGSRL SQHFGRPRRAD EVRRSRPSW T  NP

Sbjct: 94  QKKXXXAGRGGSRLXSQHFGRPRRADHEVRRSRPSWLTRXNP 135

 

 

 Score = 55.0 bits (130), Expect = 7e-006

 Identities = 26/33 (78%), Positives = 28/33 (84%)

 Frame = -3

 

Query: 354 RWLTPVIAALWEAKEGRSRG*EIKTILANMVKP 256

           RWLTPVI ALWEA+ G SRG EI+TILAN VKP

Sbjct: 4   RWLTPVIPALWEAEAGGSRGQEIETILANTVKP 36

 

 

 Score = 53.5 bits (126), Expect = 2e-005

 Identities = 30/74 (40%), Positives = 33/74 (44%)

 Frame = -2

 

Query: 3103 FFETEPRSCCPGWSAMAQSRLTATXXXXXXXXXXXXXXXSWDYRRAPPHPVIFCTSSRNR 2924

            FFETE RS                               SWDYRR PP P  FC  SR+

Sbjct: 493  FFETESRSVAQAGVQWRDLGSLQAPPPGFTPFSCLSLPSSWDYRRPPPRPANFCIFSRDG 552

 

Query: 2923 VSPC*PGCSQTPDL 2882

            VSPC PG S++PDL

Sbjct: 553  VSPCXPGWSRSPDL 566

 

 

 Score = 52.3 bits (123), Expect(2) = 8e-012

 Identities = 33/74 (44%), Positives = 34/74 (45%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLGXXXXXXXXXXXXXXXXSRVAGITGVRHHTR*FSALLAET 2926

            FFLRRSLAL  +                         SRVAG TG RHH R     L ET

Sbjct: 296  FFLRRSLALSPRLECSGAISAHCKLRLPGSRHSPASASRVAGTTGARHHARLIFVFLVET 355

 

Query: 2925 GFHHVSQAALKLLT 2884

            GFH VSQ  L LLT

Sbjct: 356  GFHRVSQDGLDLLT 369

 

 

 Score = 46.9 bits (109), Expect(2) = 7e-016

 Identities = 20/20 (100%), Positives = 20/20 (100%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGS 2878

            RARWLTPVIPALWEAEAGGS

Sbjct: 2    RARWLTPVIPALWEAEAGGS 21

 

 

 Score = 44.9 bits (104), Expect(2) = 7e-009

 Identities = 17/22 (77%), Positives = 18/22 (81%)

 Frame = +2

 

Query: 3014 LEPGGGGCSEPRLCHCTPAWAT 3079

            + PGGG CSEPR  HCTPAWAT

Sbjct: 263  VNPGGGACSEPRSRHCTPAWAT 284

 

 

 Score = 43.8 bits (101), Expect(3) = 5e-020

 Identities = 28/51 (54%), Positives = 34/51 (65%), Gaps = 4/51 (7%)

 Frame = +3

 

Query: 2727 ALLRNAAQILTAD-ATLLCSG---ESTI*RKNFPAGRGGSRL*SRHFGRPRQADH 2879

            A  R A   ++ D AT L  G   E+   +K   AGRGGSRL S+HFGRPR+ADH

Sbjct: 66   AXTREAELAVSRDRATALQPGRQSETPSQKKXXXAGRGGSRLXSQHFGRPRRADH 120

 

 

 Score = 42.6 bits (98), Expect(2) = 8e-012

 Identities = 19/24 (79%), Positives = 19/24 (79%)

 Frame = -2

 

Query: 2875 SACLGLPKCRDYRREPPRPAGKFF 2804

            SA LGLPKC DYRREPPRPA   F

Sbjct: 372  SARLGLPKCWDYRREPPRPAXXXF 395

 

 

 Score = 39.9 bits (91), Expect(2) = 7e-009

 Identities = 18/26 (69%), Positives = 19/26 (72%)

 Frame = +1

 

Query: 2953 PGVVAHACNPSYSGGCGGRIA*TGRR 3030

            PG VAHACNPS  GG GGRI  +G R

Sbjct: 198  PGAVAHACNPSTLGGRGGRITRSGDR 223

 

 

 Score = 35.2 bits (79), Expect(3) = 5e-020

 Identities = 20/37 (54%), Positives = 23/37 (62%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAGDH 3132

            GRR LQ AEI PLHSSLG+++     KK   P A  H

Sbjct: 168  GRRSLQXAEIAPLHSSLGDRARL-RLKKXXXPGAVAH 203

 

 

>sp|P39190|ALU3_HUMAN ALU SUBFAMILY SB1 SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 587

           

 Score =  106 bits (263), Expect = 2e-021

 Identities = 63/106 (59%), Positives = 64/106 (59%), Gaps = 4/106 (3%)

 Frame = +1

 

Query: 3556 GFSRCGWSFFFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCP 3735

            G S       F ETESRS AQAGV WR L SLQ P PGF  F  LSLPSSWDYR  P  P

Sbjct: 483  GVSHRARXXXFFETESRSVAQAGVQWRDLGSLQAPPPGFTPFSCLSLPSSWDYRRPPLRP 542

 

Query: 3736 ANFCILVETGVFTMLARLVLNSWLR----VIRLPWPPRVLGLQA*ATAPG 3873

            ANFCI    GV           W R    VIR P PP+VLGLQA ATAPG

Sbjct: 543  ANFCIFSRDGVSPFXP-----GWSRSPDLVIRPPRPPKVLGLQAXATAPG 587

 

 

 Score = 97.1 bits (238), Expect = 2e-018

 Identities = 57/96 (59%), Positives = 60/96 (62%)

 Frame = -1

 

Query: 3872 PGAVAQACNPSTLGGQGKRITRSQEFKTSLANMVKTPVSTKIQKLAGHDGRCL*SQXXXX 3693

            PGAVA ACNPSTLGG+G RITRS +      N  +TP   KIQKLAG  G  L SQ   

Sbjct: 198  PGAVAHACNPSTLGGRGGRITRSGDRDHPGXNG-ETPSLLKIQKLAGRSGGRLXSQLLGR 256

 

Query: 3692 XXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVSKK 3585

                   NPG G CSE R RH TPAWA ERDSVSKK

Sbjct: 257  LRQENGVNPGGGACSEPRSRHCTPAWATERDSVSKK 292

 

 

 Score = 88.9 bits (217), Expect = 4e-016

 Identities = 54/100 (54%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

 Frame = -3

 

Query: 3873 AGRGGSGLQSQHPRRPRQADHPKPGVQDQPGQ-HGENPRLYQNTKISWA*WQVPIIPATR 3697

            AGRGGS L SQH  RPR+ADH     + +P +    NP   +NTKIS A W+ P++PAT

Sbjct: 100  AGRGGSRLXSQHFGRPRRADHEVR--RSRPSRLKRXNPVSTKNTKISRAXWRAPVVPATW 157

 

Query: 3696 EAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQKKKRP 3574

            EAE  E  EP R  LQ AE+ P HSSLG  ARLRL+K   P

Sbjct: 158  EAEAGEWREPGRRSLQXAEIPPLHSSLGDRARLRLKKXXXP 198

 

 

 Score = 83.5 bits (203), Expect = 2e-014

 Identities = 53/99 (53%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

 Frame = +2

 

Query: 3593 RRSLAQLPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGFS 3772

            RRSLA  PRLEC G ISA C   L GS  S  SAS+VAG  G  H+A+LIFVF    GF

Sbjct: 299  RRSLALSPRLECSGGISAHCKLRLPGSRHSPASASQVAGTTGARHYARLIFVFLVETGFH 358

 

Query: 3773 P-CWPGWS*TPGFG*SACLGLLGCWDCRPEPPRPAPYGFF 3889

                 G         SA LGL  CWD R EPPRPA   FF

Sbjct: 359  RFSRDGLDLLTSX--SARLGLPKCWDYRREPPRPAXXXFF 396

 

 

 Score = 79.2 bits (192), Expect = 4e-013

 Identities = 50/94 (53%), Positives = 60/94 (63%), Gaps = 1/94 (1%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPAP*EAKASGSP-EARSSRPAWPTW*KPPSLPKYKN*LGMMAGAYNPSYS 3698

            GRARWL P IPA  EA+A GS  +   + PA     KP    KYKN  G++AGA +PSY

Sbjct: 1    GRARWLTPVIPALWEAEAGGSRGQEIETIPAKTV--KPRLYXKYKNXPGVVAGACSPSYL 58

 

Query: 3697 GG*DGRIA*TQEMVVAASGDGATTLQPGQLSETPS 3593

            GG   R+A T+E  +A S D AT LQPG+ SETPS

Sbjct: 59   GGXGRRMAXTREAELAVSRDPATALQPGRQSETPS 93

 

 

 Score = 69.9 bits (168), Expect = 2e-010

 Identities = 44/96 (45%), Positives = 49/96 (50%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF DGVSL  PGWS VA S L A++ S V AIL  QPP+ LGL APA  P  FLYF   

Sbjct: 395  FFXDGVSLCRPGWSAVAGSRLTASSASRVHAILLPQPPKXLGLQAPATTPGXFLYFXXRR 454

 

Query: 3765 GFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRAR 3872

            GF  V    + +    DP              HRAR

Sbjct: 455  GF-TVLAGMVSISXPRDPPASASQSAGITGVSHRAR 489

 

 

 Score = 62.8 bits (150), Expect = 3e-008

 Identities = 27/36 (75%), Positives = 32/36 (88%)

 Frame = -2

 

Query: 355 AVAHACNRSTLGGQGGQIKRLGDQDHPGQHGETPNL 248

           AVAHACN STLGG+GG+I R GD+DHPG +GETP+L

Sbjct: 200 AVAHACNPSTLGGRGGRITRSGDRDHPGXNGETPSL 235

 

 

 Score = 57.4 bits (136), Expect = 1e-006

 Identities = 26/33 (78%), Positives = 27/33 (81%)

 Frame = +1

 

Query: 256 GFHHVGQDGLDLLTS*SALLGLPKCCDYRREPP 354

           GFH   +DGLDLLTS SA LGLPKC DYRREPP

Sbjct: 356 GFHRFSRDGLDLLTSXSARLGLPKCWDYRREPP 388

 

 

 Score = 54.7 bits (129), Expect(2) = 9e-014

 Identities = 34/80 (42%), Positives = 40/80 (49%)

 Frame = +1

 

Query: 2887 QEFESSLANMVKPCFC*KCRKLPGVVAHACNPSYSGGCGGRIA*TGRRRLQ*AEIVPLHS 3066

            QE E+  A  VKP    K +  PGVVA AC+PSY GG G R+A T    L  +      

Sbjct: 24   QEIETIPAKTVKPRLYXKYKNXPGVVAGACSPSYLGGXGRRMAXTREAELAVSRDPATAL 83

 

Query: 3067 SLGNKSEAPSQKKKEFPSAG 3126

              G +SE PSQKK      G

Sbjct: 84   QPGRQSETPSQKKXXXAGRG 103

 

 

 Score = 53.1 bits (125), Expect = 3e-005

 Identities = 26/35 (74%), Positives = 27/35 (76%)

 Frame = -1

 

Query: 380 QRKEKLGQCGGSRL*SQHFGRPRRADQEVRRSRPS 276

           Q+K      GGSRL SQHFGRPRRAD EVRRSRPS

Sbjct: 94  QKKXXXAGRGGSRLXSQHFGRPRRADHEVRRSRPS 128

 

 

 Score = 47.6 bits (111), Expect(3) = 2e-015

 Identities = 25/48 (52%), Positives = 30/48 (62%)

 Frame = +2

 

Query: 2882 EVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREAAAGESLEPG 3025

            EVR  R + L   NPVS ++ +  R  WR PV+PAT EA AGE  EPG

Sbjct: 121  EVRRSRPSRLKRXNPVSTKNTKISRAXWRAPVVPATWEAEAGEWREPG 168

 

 

 Score = 46.9 bits (109), Expect(2) = 9e-014

 Identities = 20/20 (100%), Positives = 20/20 (100%)

 Frame = +2

 

Query: 2819 RARWLTPVIPALWEAEAGGS 2878

            RARWLTPVIPALWEAEAGGS

Sbjct: 2    RARWLTPVIPALWEAEAGGS 21

 

 

 Score = 44.9 bits (104), Expect(2) = 9e-010

 Identities = 29/74 (39%), Positives = 33/74 (44%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLGXXXXXXXXXXXXXXXXSRVAGITGVRHHTR*FSALLAET 2926

            FFLRRSLAL  +                         S+VAG TG RH+ R     L ET

Sbjct: 296  FFLRRSLALSPRLECSGGISAHCKLRLPGSRHSPASASQVAGTTGARHYARLIFVFLVET 355

 

Query: 2925 GFHHVSQAALKLLT 2884

            GFH  S+  L LLT

Sbjct: 356  GFHRFSRDGLDLLT 369

 

 

 Score = 44.9 bits (104), Expect(2) = 7e-009

 Identities = 17/22 (77%), Positives = 18/22 (81%)

 Frame = +2

 

Query: 3014 LEPGGGGCSEPRLCHCTPAWAT 3079

            + PGGG CSEPR  HCTPAWAT

Sbjct: 263  VNPGGGACSEPRSRHCTPAWAT 284

 

 

 Score = 44.5 bits (103), Expect(3) = 2e-015

 Identities = 35/75 (46%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

 Frame = +3

 

Query: 2655 VGGRCFQGKPSYLFPRTLCCSEDTALLRNAAQILTAD-ATLLCSG---ESTI*RKNFPAG 2822

            V G C    PSYL           A  R A   ++ D AT L  G   E+   +K   AG

Sbjct: 49   VAGAC---SPSYLGGX----GRRMAXTREAELAVSRDPATALQPGRQSETPSQKKXXXAG 101

 

Query: 2823 RGGSRL*SRHFGRPRQADH 2879

            RGGSRL S+HFGRPR+ADH

Sbjct: 102  RGGSRLXSQHFGRPRRADH 120

 

 

 Score = 43.0 bits (99), Expect(2) = 9e-010

 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

 Frame = -2

 

Query: 2875 SACLGLPKCRDYRREPPRPAGKFFLYIVLS---PEQSRVASAVRICAAFLSK 2729

            SA LGLPKC DYRREPPRPA   F    +S   P  S VA + R+ A+  S+

Sbjct: 372  SARLGLPKCWDYRREPPRPAXXXFFXDGVSLCRPGWSAVAGS-RLTASSASR 422

 

 

 Score = 39.9 bits (91), Expect(2) = 7e-009

 Identities = 18/26 (69%), Positives = 19/26 (72%)

 Frame = +1

 

Query: 2953 PGVVAHACNPSYSGGCGGRIA*TGRR 3030

            PG VAHACNPS  GG GGRI  +G R

Sbjct: 198  PGAVAHACNPSTLGGRGGRITRSGDR 223

 

 

 Score = 34.4 bits (77), Expect(3) = 2e-015

 Identities = 20/37 (54%), Positives = 23/37 (62%)

 Frame = +1

 

Query: 3022 GRRRLQ*AEIVPLHSSLGNKSEAPSQKKKEFPSAGDH 3132

            GRR LQ AEI PLHSSLG+++     KK   P A  H

Sbjct: 168  GRRSLQXAEIPPLHSSLGDRARL-RLKKXXXPGAVAH 203

 

 

>ref|NP_060265.1|| hypothetical protein FLJ20378 >gi|7020440|dbj|BAA91131.1| (AK000385)

            unnamed protein product [Homo sapiens]

            Length = 152

           

 Score = 83.1 bits (202), Expect(2) = 2e-021

 Identities = 39/62 (62%), Positives = 43/62 (68%)

 Frame = +1

 

Query: 3580 FFFLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVE 3759

            FFFL       AQAGV WR+L SLQPP PGF++F  LSL SSWDYRH P CPA F  LV+

Sbjct: 24   FFFLRQSFALVAQAGVQWRNLGSLQPPPPGFKQFSCLSLLSSWDYRHAPPCPAYFVFLVD 83

 

Query: 3760 TG 3765

             G

Sbjct: 84   MG 85

 

 

 Score = 60.1 bits (143), Expect = 2e-007

 Identities = 39/98 (39%), Positives = 45/98 (45%)

 Frame = -3

 

Query: 3111 FFFFLRRSLALVAQAGVQWHNLGXXXXXXXXXXXXXXXXSRVAGITGVRHHTR*FSALLA 2932

            FFFFLR+S ALVAQAGVQW NLG                   +           +   L

Sbjct: 23   FFFFLRQSFALVAQAGVQWRNLGSLQPPPPGFKQFSCLSLLSSWDYRHAPPCPAYFVFLV 82

 

Query: 2931 ETGFHHVSQAALKLLTXXXXXXXXXXXAGITGVSHRAR 2818

            + GF HV Q  L+LLT           AGITG SHRA+

Sbjct: 83   DMGFPHVGQTGLELLTSGDPPASASQSAGITGGSHRAQ 120

 

 

 Score = 44.1 bits (102), Expect(2) = 2e-021

 Identities = 25/57 (43%), Positives = 28/57 (48%)

 Frame = +3

 

Query: 3741 FLYFGRDGGFHHVGQAGLELLASGDPXXXXXXXXXXXXXXHRARPLMGSSTLLGSLF 3911

            +  F  D GF HVGQ GLELL SGDP              HRA+P   SS   G +F

Sbjct: 77   YFVFLVDMGFPHVGQTGLELLTSGDPPASASQSAGITGGSHRAQPT--SSNPYGIVF 131

 

 

>sp|P39195|ALU8_HUMAN ALU SUBFAMILY SX SEQUENCE CONTAMINATION WARNING ENTRY

            Length = 591

           

 Score = 92.4 bits (226), Expect(2) = 3e-021

 Identities = 44/61 (72%), Positives = 45/61 (73%)

 Frame = +1

 

Query: 3586 FLETESRSAAQAGVWWRHLRSLQPPSPGFRRFFRLSLPSSWDYRHLPSCPANFCILVETG 3765

            F ETESRS AQAGV WR L SLQPP PGF+RF  LSLPSSWDYR  P  PANFCI    G

Sbjct: 496  FFETESRSVAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRAPPRPANFCIFSRDG 555

 

Query: 3766 V 3768

            V

Sbjct: 556  V 556

 

 

 Score = 78.0 bits (189), Expect(3) = 6e-021

 Identities = 41/59 (69%), Positives = 42/59 (70%)

 Frame = +2

 

Query: 3593 RRSLAQLPRLECGGAISARCNHHLLGSGDSSVSASRVAGIIGTCHHAQLIFVFW*RRGF 3769

            RRSLA  PRLEC GAISA CN  L GS DS  SASRVAGI G  HHA+LIFVF    GF

Sbjct: 301  RRSLALSPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVETGF 359

 

 

 Score = 76.9 bits (186), Expect = 2e-012

 Identities = 36/52 (69%), Positives = 39/52 (74%)

 Frame = +2

 

Query: 2870 GGSLEVRSLRAAWLTW*NPVSARSAENYRVWWRTPVIPATREAAAGESLEPG 3025

            G S EVRS R AW TW NPVS ++ +  R WWR PVIPATREA AGESLEPG

Sbjct: 19   GRSPEVRSSRPAWPTWXNPVSTKNTKISRAWWRAPVIPATREAEAGESLEPG 70

 

 

 Score = 73.7 bits (178), Expect = 2e-011

 Identities = 40/61 (65%), Positives = 45/61 (73%)

 Frame = -3

 

Query: 3768 NPRLYQNTKISWA*WQVPIIPATREAETEESPEPRRWWLQRAEMAPPHSSLGS*ARLRLQ 3589

            NP   +NTKIS A W+ P+IPATREAE  ES EP R  LQ AE+AP HSSLG  ARLRL+

Sbjct: 36   NPVSTKNTKISRAWWRAPVIPATREAEAGESLEPGRRRLQXAEIAPLHSSLGDRARLRLK 95

 

Query: 3588 K 3586

            K

Sbjct: 96   K 96

 

 

 Score = 71.0 bits (171), Expect = 1e-010

 Identities = 40/73 (54%), Positives = 45/73 (60%)

 Frame = +1

 

Query: 2887 QEFESSLANMVKPCFC*KCRKLPGVVAHACNPSYSGGCGGRIA*TGRRRLQ*AEIVPLHS 3066

            QEFE+SLANMVKP    K +  PGVVA ACNPSYSGG G RIA T    +  +      

Sbjct: 222  QEFETSLANMVKPRLYXKYKNXPGVVARACNPSYSGGXGRRIAXTREAEVAVSRDRATAL 281

 

Query: 3067 SLGNKSEAPSQKK 3105

              G +SE PSQKK

Sbjct: 282  QPGRQSETPSQKK 294

 

 

 Score = 68.3 bits (164), Expect(2) = 5e-013

 Identities = 39/62 (62%), Positives = 40/62 (63%)

 Frame = +3

 

Query: 3585 FFGDGVSLSCPGWSVVAPSPLAATTISWVQAILPSQPPE*LGL*APAIMPS*FLYFGRDG 3764

            FF DGVSL  PGWS VA S L AT+ S VQAIL  QPPE LGL A A  P  FLYF   

Sbjct: 397  FFXDGVSLCRPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQARATTPGXFLYFXXRR 456

 

Query: 3765 GF 3770

            GF

Sbjct: 457  GF 458

 

 

 Score = 66.7 bits (160), Expect(2) = 3e-011

 Identities = 37/62 (59%), Positives = 38/62 (60%)

 Frame = -1

 

Query: 3770 KTPVSTKIQKLAGHDGRCL*SQXXXXXXXXXXXNPGDGGCSERRWRHHTPAWAAERDSVS 3591

            +TP   KIQKLAG  G  L SQ           NPG GGCSE R RH TPAWA ERDSVS

Sbjct: 134  ETPSLLKIQKLAGRGGARLXSQLLGRLRQENRLNPGGGGCSEPRSRHCTPAWATERDSVS 193

 

Query: 3590 KK 3585

            KK

Sbjct: 194  KK 195

 

 

 Score = 64.4 bits (154), Expect(2) = 9e-010

 Identities = 45/80 (56%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

 Frame = -2

 

Query: 3769 KPPSLPKYKN*LGMMAGAYNPSYSGG*DGRIA*TQEMVVAASGDGATTLQPGQLSETPSP 3590

            KP    KYKN  G++A A NPSYSGG   RIA T+E  VA S D AT LQPG+ SETPS

Sbjct: 233  KPRLYXKYKNXPGVVARACNPSYSGGXGRRIAXTREAEVAVSRDRATALQPGRQSETPSQ 292

 

Query: 3589 XXXXXTHNEKSL-LPPFMENS 3530

                     +SL L P +E S

Sbjct: 293  KKXXXFFLRRSLALSPRLECS 313

 

 

 Score = 59.7 bits (142), Expect = 3e-007

 Identities = 51/88 (57%), Positives = 58/88 (64%), Gaps = 57/88 (64%)

 Frame = +2

 

Query: 2816 SRARWLTPVIPALWEAEAGGSLEV--RSLRAAWLTW*NPVSARSAENYRVW--------- 2962

            SRA W  PVIPA  EAEAG SLE   R L+ A +    P+ +   +  R+         

Sbjct: 46   SRAWWRAPVIPATREAEAGESLEPGRRRLQXAEIA---PLHSSLGDRARLRLKKXXXAGG 102

 

Query: 2963 ----WRTPVIPATRE------------AAAGES--------------------------- 3013

                W TPVIPA  E               GE+                          

Sbjct: 103  GRARWLTPVIPALWEEDHLRSGVRDQPGQHGETPSLLKIQKLAGRGGARLXSQLLGRLRQ 162

 

Query: 3014 ---LEPGGGGCSEPRLCHCTPAWAT 3079

               L PGGGGCSEPR  HCTPAWAT

Sbjct: 163  ENRLNPGGGGCSEPRSRHCTPAWAT 187

 

 

 Score = 59.3 bits (141), Expect = 4e-007

 Identities = 35/74 (47%), Positives = 37/74 (49%)

 Frame = -3

 

Query: 3105 FFLRRSLALVAQAGVQWHNLGXXXXXXXXXXXXXXXXSRVAGITGVRHHTR*FSALLAET 2926

            FFLRRSLAL  +                         SRVAGITG RHH R     L ET

Sbjct: 298  FFLRRSLALSPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVET 357

 

Query: 2925 GFHHVSQAALKLLT 2884

            GFHHV QA L+LLT

Sbjct: 358  GFHHVGQAGLELLT 371

 

 

 Score = 58.6 bits (139), Expect(2) = 6e-009

 Identities = 29/53 (54%), Positives = 34/53 (63%), Gaps = 2/53 (3%)

 Frame = -2

 

Query: 2983 WDYRRAPPHPVIFCTSSRNRVSPC*PGCSQTPDLK*SA--CLGLPKCRDYRREPP 2825

            WDYRRAPP P  FC  SR+ VSPC PG S+TPDL+ S+    G+       R PP

Sbjct: 536  WDYRRAPPRPANFCIFSRDGVSPCWPGWSRTPDLRXSSSQSAGITGVSHRARPPP 590

 

 

 Score = 57.4 bits (136), Expect = 1e-006

 Identities = 39/81 (48%), Positives = 44/81 (54%)

 Frame = -1

 

Query: 3104 FF*DGASLLLPRLECNGTISAHCNLRLPVQAIXXXXXXXXXXXQACATTPGNFLHF*QKQ 2925

            FF DG SL  P                 VQAI           QA ATTPG FL+F  ++

Sbjct: 397  FFXDGVSLCRPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQARATTPGXFLYFXXRR 456

 

Query: 2924 GFTMLARLLSNS*PQVIRLPR 2862

            GFTMLARL+SNS PQVI LP+

Sbjct: 457  GFTMLARLVSNSXPQVIFLPK 477

 

 

 Score = 37.9 bits (86), Expect(3) = 6e-021

 Identities = 16/17 (94%), Positives = 16/17 (94%)

 Frame = +3

 

Query: 3765 GFHHVGQAGLELLASGD 3815

            GFHHVGQAGLELL SGD

Sbjct: 358  GFHHVGQAGLELLTSGD 374

 

 

 Score = 34.4 bits (77), Expect(2) = 3e-021

 Identities = 13/20 (65%), Positives = 14/20 (70%)

 Frame = +2

 

Query: 3743 FVFW*RRGFSPCWPGWS*TP 3802

            F  + R G SPCWPGWS TP

Sbjct: 548  FCIFSRDGVSPCWPGWSRTP 567

 

 

 Score = 30.5 bits (67), Expect(2) = 5e-013

 Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

 Frame = +2

 

Query: 3839 CWDCRPEPPRPAP---YGFFYTAGISVLSA 3919

            CWD R EPPRPA      FF T   SV  A

Sbjct: 478  CWDYRREPPRPASARXXXFFETESRSVAQA 507

 

 

 Score = 29.7 bits (65), Expect(3) = 6e-021

 Identities = 13/15 (86%), Positives = 14/15 (92%)

 Frame = +1

 

Query: 3829 PPRVLGLQA*ATAPG 3873

            PP+VLGLQA ATAPG

Sbjct: 376  PPKVLGLQAXATAPG 390

 

 

 Score = 26.6 bits (57), Expect(2) = 6e-009

 Identities = 21/55 (38%), Positives = 27/55 (48%)

 Frame = -3

 

Query: 3207 VHNASLIIVFL*DCH*KNDKTRELKMISC*GKFFFFLRRSLALVAQAGVQWHNLG 3043

            V N+   ++FL  C    D  RE    +      FF   S + VAQAGVQW +LG

Sbjct: 465  VSNSXPQVIFLPKCW---DYRREPPRPASARXXXFFETESRS-VAQAGVQWRDLG 515

 

 

 Score = 26.2 bits (56), Expect(2) = 3e-011

 Identities = 10/12 (83%), Positives = 10/12 (83%)

 Frame = -2

 

Query: 3874 GRARWLRPAIPA 3839

            GRARWL P IPA

Sbjct: 103  GRARWLTPVIPA 114

 

 

 Score = 23.5 bits (49), Expect(2) = 9e-010

 Identities = 10/12 (83%), Positives = 10/12 (83%)

 Frame = -3

 

Query: 3873 AGRGGSGLQSQH 3838

            AGRGGS L SQH

Sbjct: 202  AGRGGSRLXSQH 213

 

 

  Database: nr

    Posted date:  Oct 24, 2000  1:47 AM

  Number of letters in database: 181,542,687

  Number of sequences in database:  576,719

 

Lambda     K      H

   0.318    0.135    0.000

 

Gapped

Lambda     K      H

   0.270   0.0470    0.000

 

 

Matrix: BLOSUM62

Gap Penalties: Existence: 11, Extension: 1

Number of Hits to DB: 1721445992

Number of Sequences: 576719

Number of extensions: 40379397

Number of successful extensions: 108330

Number of sequences better than 1.0e-04: 101

Number of HSP's better than  0.0 without gapping: 90

Number of HSP's successfully gapped in prelim test: 3

Number of HSP's that attempted gapping in prelim test: 106822

Number of HSP's gapped (non-prelim): 1303

length of query: 1647

length of database: 181,542,687

effective HSP length: 59

effective length of query: 1588

effective length of database: 147,516,266

effective search space: 234255830408

effective search space used: 234255830408

frameshift window, decay const: 50,  0.1

T: 12

A: 40

X1: 16 ( 7.3 bits)

X2: 38 (14.8 bits)

X3: 64 (24.9 bits)

S1: 41 (21.7 bits)

S2: 120 (51.2 bits)