BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1016574752-26093-20850 Query= gnl|UG|Hs#S1343552 ts80b10.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:2237563 /clone_end=3' /gb=AI623305 /gi=4648230 /ug=Hs.46637 /len=593 (593 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 891,607 sequences; 279,182,324 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1016574752-26093-20850
Query= gnl|UG|Hs#S1343552 ts80b10.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:2237563 /clone_end=3' /gb=AI623305 /gi=4648230 /ug=Hs.46637 /len=593 (593 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 891,607 sequences; 279,182,324 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|17442885|ref|XP_059667.1| (XM_059667) similar to putativ... 170 7e-42 gi|17536935|ref|NP_496566.1| (NM_064165) Y17G7B.10b.p [Caen... 83 2e-15 gi|17536933|ref|NP_496565.1| (NM_064164) Y17G7B.10a.p [Caen... 83 2e-15 gi|12856019|dbj|BAB30539.1| (AK016988) data source:SPTR, so... 79 3e-14 gi|12834781|dbj|BAB23041.1| (AK003858) data source:SPTR, so... 79 3e-14 gi|7303949|gb|AAF58993.1| (AE003834) CG8080 gene product [D... 73 2e-12 gi|17544238|ref|NP_500084.1| (NM_067683) Y77E11A.2.p [Caeno... 70 2e-11 Alignments >gi|17442885|ref|XP_059667.1| (XM_059667) similar to putative [Homo sapiens] gi|16549825|dbj|BAB70864.1| (AK055158) unnamed protein product [Homo sapiens] Length = 279 Score = 170 bits (431), Expect = 7e-42 Identities = 83/83 (100%), Positives = 83/83 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF Sbjct: 197 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 256 Query: 413 NDGAIASMMINKEDELRTVLLEQ 345 NDGAIASMMINKEDELRTVLLEQ Sbjct: 257 NDGAIASMMINKEDELRTVLLEQ 279 >gi|17536935|ref|NP_496566.1| (NM_064165) Y17G7B.10b.p [Caenorhabditis elegans] gi|7509424|pir||T26502 hypothetical protein Y17G7B.10b - Caenorhabditis elegans gi|3947604|emb|CAA19456.1| (AL023828) cDNA EST yk129f1.3 comes from this gene~cDNA EST yk129f1.5 comes from this gene~cDNA EST yk203e4.3 comes from this gene~cDNA EST yk191a9.3 comes from this gene~cDNA EST yk262c10.3 comes from this gene~cDNA EST yk278f9.3 comes from this gene~> Length = 492 Score = 82.8 bits (203), Expect = 2e-15 Identities = 35/80 (43%), Positives = 56/80 (69%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 +N+ L++ P+ ++ FS+R+PI N F + R F+ K+C++SR +DA +V+DGG S+ F Sbjct: 411 FNQQLIFDPDRKQLAFSVRDPIFNATFPPTDPRGFADKICIKSRGYDAHLVIDGGISYRF 470 Query: 413 NDGAIASMMINKEDELRTVL 354 NDG+ A M + ED LRTV+ Sbjct: 471 NDGSEAVMEVRDEDTLRTVV 490 >gi|17536933|ref|NP_496565.1| (NM_064164) Y17G7B.10a.p [Caenorhabditis elegans] gi|7509423|pir||T26501 hypothetical protein Y17G7B.10a - Caenorhabditis elegans gi|3947603|emb|CAA19455.1| (AL023828) cDNA EST yk167h7.3 comes from this gene~cDNA EST yk167h7.5 comes from this gene~cDNA EST yk289g5.3 comes from this gene~cDNA EST yk332h9.3 comes from this gene~cDNA EST yk289g5.5 comes from this gene~cDNA EST yk332h9.5 comes from this gene~c> Length = 514 Score = 82.8 bits (203), Expect = 2e-15 Identities = 35/80 (43%), Positives = 56/80 (69%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 +N+ L++ P+ ++ FS+R+PI N F + R F+ K+C++SR +DA +V+DGG S+ F Sbjct: 433 FNQQLIFDPDRKQLAFSVRDPIFNATFPPTDPRGFADKICIKSRGYDAHLVIDGGISYRF 492 Query: 413 NDGAIASMMINKEDELRTVL 354 NDG+ A M + ED LRTV+ Sbjct: 493 NDGSEAVMEVRDEDTLRTVV 512 >gi|12856019|dbj|BAB30539.1| (AK016988) data source:SPTR, source key:Q9XXI6, evidence:ISS~putative~related to Y17G7B.10A PROTEIN [Mus musculus] Length = 321 Score = 79.0 bits (193), Expect = 3e-14 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 480 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK Sbjct: 284 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 321 >gi|12834781|dbj|BAB23041.1| (AK003858) data source:SPTR, source key:Q9XXI6, evidence:ISS~putative~related to Y17G7B.10A PROTEIN [Mus musculus] Length = 324 Score = 79.0 bits (193), Expect = 3e-14 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 480 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK Sbjct: 287 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 324 >gi|7303949|gb|AAF58993.1| (AE003834) CG8080 gene product [Drosophila melanogaster] Length = 409 Score = 73.2 bits (178), Expect = 2e-12 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSR---QRCFSSKVCVRSRCWDACMVVDGGTS 423 YN+ LL++P++P++ +SIRE I V+ S + +R F V V+S C DA +V+DG S Sbjct: 325 YNQGLLFAPDDPRLCYSIREQICVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSIS 384 Query: 422 FEFNDGAIASMMINKEDELRTVLLE 348 F FNDGA A + ++ ED L T+ L+ Sbjct: 385 FPFNDGAKALLEVHPEDALLTIALD 409 >gi|17544238|ref|NP_500084.1| (NM_067683) Y77E11A.2.p [Caenorhabditis elegans] gi|7105689|gb|AAF36072.1| (AC024214) Hypothetical protein Y77E11A.2 [Caenorhabditis elegans] Length = 436 Score = 69.7 bits (169), Expect = 2e-11 Identities = 31/80 (38%), Positives = 49/80 (60%) Frame = -1 Query: 590 NESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEFN 411 NE + + P+ P FSIREPI N + + R F+ K+ + SRC + +V+DG T F Sbjct: 357 NEKIPFEPDHPSFAFSIREPIFNATYKRTATRGFARKIKLESRCTNGYLVLDGSTKIPFP 416 Query: 410 DGAIASMMINKEDELRTVLL 351 GA+A++ +N D L+TV++ Sbjct: 417 RGAVATIEVNPNDALKTVIV 436 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 6, 2002 1:29 AM Number of letters in database: 279,182,324 Number of sequences in database: 891,607 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,737,927 Number of Sequences: 891607 Number of extensions: 5014773 Number of successful extensions: 11912 Number of sequences better than 1.0e-02: 14 Number of HSP's better than 0.0 without gapping: 11581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11893 length of database: 279,182,324 effective HSP length: 114 effective length of database: 177,539,126 effective search space used: 14735747458 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Score E Sequences producing significant alignments: (bits) Value gi|17442885|ref|XP_059667.1| (XM_059667) similar to putativ... 170 7e-42 gi|17536935|ref|NP_496566.1| (NM_064165) Y17G7B.10b.p [Caen... 83 2e-15 gi|17536933|ref|NP_496565.1| (NM_064164) Y17G7B.10a.p [Caen... 83 2e-15 gi|12856019|dbj|BAB30539.1| (AK016988) data source:SPTR, so... 79 3e-14 gi|12834781|dbj|BAB23041.1| (AK003858) data source:SPTR, so... 79 3e-14 gi|7303949|gb|AAF58993.1| (AE003834) CG8080 gene product [D... 73 2e-12 gi|17544238|ref|NP_500084.1| (NM_067683) Y77E11A.2.p [Caeno... 70 2e-11
>gi|17442885|ref|XP_059667.1| (XM_059667) similar to putative [Homo sapiens] gi|16549825|dbj|BAB70864.1| (AK055158) unnamed protein product [Homo sapiens] Length = 279 Score = 170 bits (431), Expect = 7e-42 Identities = 83/83 (100%), Positives = 83/83 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF Sbjct: 197 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 256 Query: 413 NDGAIASMMINKEDELRTVLLEQ 345 NDGAIASMMINKEDELRTVLLEQ Sbjct: 257 NDGAIASMMINKEDELRTVLLEQ 279
>gi|17536935|ref|NP_496566.1| (NM_064165) Y17G7B.10b.p [Caenorhabditis elegans] gi|7509424|pir||T26502 hypothetical protein Y17G7B.10b - Caenorhabditis elegans gi|3947604|emb|CAA19456.1| (AL023828) cDNA EST yk129f1.3 comes from this gene~cDNA EST yk129f1.5 comes from this gene~cDNA EST yk203e4.3 comes from this gene~cDNA EST yk191a9.3 comes from this gene~cDNA EST yk262c10.3 comes from this gene~cDNA EST yk278f9.3 comes from this gene~> Length = 492 Score = 82.8 bits (203), Expect = 2e-15 Identities = 35/80 (43%), Positives = 56/80 (69%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 +N+ L++ P+ ++ FS+R+PI N F + R F+ K+C++SR +DA +V+DGG S+ F Sbjct: 411 FNQQLIFDPDRKQLAFSVRDPIFNATFPPTDPRGFADKICIKSRGYDAHLVIDGGISYRF 470 Query: 413 NDGAIASMMINKEDELRTVL 354 NDG+ A M + ED LRTV+ Sbjct: 471 NDGSEAVMEVRDEDTLRTVV 490
>gi|17536933|ref|NP_496565.1| (NM_064164) Y17G7B.10a.p [Caenorhabditis elegans] gi|7509423|pir||T26501 hypothetical protein Y17G7B.10a - Caenorhabditis elegans gi|3947603|emb|CAA19455.1| (AL023828) cDNA EST yk167h7.3 comes from this gene~cDNA EST yk167h7.5 comes from this gene~cDNA EST yk289g5.3 comes from this gene~cDNA EST yk332h9.3 comes from this gene~cDNA EST yk289g5.5 comes from this gene~cDNA EST yk332h9.5 comes from this gene~c> Length = 514 Score = 82.8 bits (203), Expect = 2e-15 Identities = 35/80 (43%), Positives = 56/80 (69%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEF 414 +N+ L++ P+ ++ FS+R+PI N F + R F+ K+C++SR +DA +V+DGG S+ F Sbjct: 433 FNQQLIFDPDRKQLAFSVRDPIFNATFPPTDPRGFADKICIKSRGYDAHLVIDGGISYRF 492 Query: 413 NDGAIASMMINKEDELRTVL 354 NDG+ A M + ED LRTV+ Sbjct: 493 NDGSEAVMEVRDEDTLRTVV 512
>gi|12856019|dbj|BAB30539.1| (AK016988) data source:SPTR, source key:Q9XXI6, evidence:ISS~putative~related to Y17G7B.10A PROTEIN [Mus musculus] Length = 321 Score = 79.0 bits (193), Expect = 3e-14 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 480 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK Sbjct: 284 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 321
>gi|12834781|dbj|BAB23041.1| (AK003858) data source:SPTR, source key:Q9XXI6, evidence:ISS~putative~related to Y17G7B.10A PROTEIN [Mus musculus] Length = 324 Score = 79.0 bits (193), Expect = 3e-14 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 480 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK Sbjct: 287 YNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSK 324
>gi|7303949|gb|AAF58993.1| (AE003834) CG8080 gene product [Drosophila melanogaster] Length = 409 Score = 73.2 bits (178), Expect = 2e-12 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Frame = -1 Query: 593 YNESLLYSPEEPKILFSIREPIANRVFSSSR---QRCFSSKVCVRSRCWDACMVVDGGTS 423 YN+ LL++P++P++ +SIRE I V+ S + +R F V V+S C DA +V+DG S Sbjct: 325 YNQGLLFAPDDPRLCYSIREQICVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSIS 384 Query: 422 FEFNDGAIASMMINKEDELRTVLLE 348 F FNDGA A + ++ ED L T+ L+ Sbjct: 385 FPFNDGAKALLEVHPEDALLTIALD 409
>gi|17544238|ref|NP_500084.1| (NM_067683) Y77E11A.2.p [Caenorhabditis elegans] gi|7105689|gb|AAF36072.1| (AC024214) Hypothetical protein Y77E11A.2 [Caenorhabditis elegans] Length = 436 Score = 69.7 bits (169), Expect = 2e-11 Identities = 31/80 (38%), Positives = 49/80 (60%) Frame = -1 Query: 590 NESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSRCWDACMVVDGGTSFEFN 411 NE + + P+ P FSIREPI N + + R F+ K+ + SRC + +V+DG T F Sbjct: 357 NEKIPFEPDHPSFAFSIREPIFNATYKRTATRGFARKIKLESRCTNGYLVLDGSTKIPFP 416 Query: 410 DGAIASMMINKEDELRTVLL 351 GA+A++ +N D L+TV++ Sbjct: 417 RGAVATIEVNPNDALKTVIV 436
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 6, 2002 1:29 AM Number of letters in database: 279,182,324 Number of sequences in database: 891,607 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,737,927 Number of Sequences: 891607 Number of extensions: 5014773 Number of successful extensions: 11912 Number of sequences better than 1.0e-02: 14 Number of HSP's better than 0.0 without gapping: 11581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11893 length of database: 279,182,324 effective HSP length: 114 effective length of database: 177,539,126 effective search space used: 14735747458 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)