TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S501441 zn45h07.r1 Homo sapiens cDNA, 5' end
/clone=IMAGE:550429 /clone_end=5'
/gb=AA098911 /gi=1644963 /ug=Hs.9911
/len=622
(622 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
|
|
Score
E
Sequences producing significant
alignments:
(bits)
Value
7394_1
EST composition (unordered) : HL05860.5prime,GH16639.5prime 76 7e-015
>7394_1 EST composition
(unordered) : HL05860.5prime,GH16639.5prime
Length = 823
Score = 48.7 bits (100), Expect =
1e-006
Identities = 22/38 (57%), Positives =
26/38 (67%)
Frame = +2 / -1
Query:
377 GCTSRKPVSNTLSTSDCVGILGKYSCRFITSTMLMIFS 490
GCTS K VS S+S +G+LG SCRFI+S M M FS
Sbjct:
787 GCTSGKDVSKIRSSSLWLGVLGT*SCRFISSVMYMTFS 674
Score = 75.7 bits (159), Expect =
7e-015
Identities = 27/47 (57%), Positives =
37/47 (78%)
Frame = -2 / +3
Query:
495 ICEKIINIVEVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISF 355
+ EK+I I E+MNRH+Y+PK P+QSE+D +FDT DVQPYL+K +
Sbjct:
669 LTEKVIYITELMNRHDYVPKTPSQSELDLIFDTSFPDVQPYLFKFDY 809
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 17368555
Number
of Sequences: 13830
Number
of extensions: 335153
Number
of successful extensions: 20052
Number
of sequences better than 1.0e-003: 1
length
of query: 207
length
of database: 3,170,091
effective HSP length:
44
effective length of query:
162
effective length of database:
2,561,571
effective search space:
414974502
effective search space used:
414974502
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 78 (38.6 bits)