TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S912291 ny71f03.s1 Homo sapiens cDNA
/clone=IMAGE:1283741 /gb=AA744855
/gi=2783619 /ug=Hs.9825 /len=576
(576 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
|
|
Score
E
Sequences producing significant
alignments:
(bits)
Value
160_4
EST composition (unordered) : LP10549.5prime,GH25670.3pri... 94 3e-028
>160_4 EST composition
(unordered) :
LP10549.5prime,GH25670.3prime,LP11477.5prime,
GH22868.3prime
Length = 987
Score = 42.8 bits (87), Expect =
6e-005
Identities = 24/69 (34%), Positives =
32/69 (45%)
Frame = +2 / -1
Query:
194 VGVLQGSCTRSLSASCLFTACSEAWVPGVMCTSILKR*GRERRSLTLMDRPIRVAMLQCG
373
+G + RSLS CL
+ S P +M S G R + T + PI VA QCG
Sbjct:
795 LGFSMAAAMRSLSLICLLISSSV*CAPFLMYMSSFMLCGSPRSTFTRIQSPISVANEQCG
616
Query:
374 MVGVKATAT 400
VG+ +
T
Sbjct:
615 TVGLNSMRT 589
Score = 43.7 bits (89), Expect(3) =
3e-028
Identities = 18/33 (54%), Positives =
23/33 (69%)
Frame = -1 / +2
Query:
507 IFDLIRSINDPEHPLTLEELNVVEQVRVQVSDP 409
I+DL+R I DPE P TLE+LNVV + +
V P
Sbjct:
470 IYDLLRGIRDPEKPCTLEDLNVVYEDGIFVMPP 568
Score = 94.1 bits (199), Expect(3) =
3e-028
Identities = 35/70 (50%), Positives =
47/70 (67%)
Frame = -1 / +2
Query:
405 STVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADK
226
S V + F PT+PHCS+ATLIGL I+VK+ R LP K+D++I G H +E +NKQ+ DK
Sbjct:
584 SVVRIEFNPTVPHCSLATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDK
763
Query:
225 ERVQLPWRTP 196
ER+
P
Sbjct:
764 ERIAAAMENP 793
Score = 23.5 bits (45), Expect(3) =
3e-028
Identities = 8/17 (47%), Positives =
13/17 (76%)
Frame = -3 / +2
Query:
217 AAALENTHLLEVVNQCL 167
AAA+EN +L ++V
C+
Sbjct:
773 AAAMENPNLRDLVENCI 823
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 16376114
Number
of Sequences: 13830
Number
of extensions: 330042
Number
of successful extensions: 16415
Number
of sequences better than 1.0e-003: 1
length
of query: 192
length
of database: 3,170,091
effective HSP length:
44
effective length of query:
147
effective length of database:
2,561,571
effective search space:
376550937
effective search space used:
376550937
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 78
(38.6 bits)