TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S592272 Human clone 23773 mRNA sequence /cds=UNKNOWN

/gb=U90904 /gi=1913882 /ug=Hs.83724 /len=1421

         (1421 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>5377_2 EST composition (unordered) : GM13388.3prime

           Length = 484

          

 Score = 47.8 bits (98), Expect = 5e-006

 Identities = 17/38 (44%), Positives = 26/38 (67%)

 Frame = +1 / -3

 

                                                

Query: 271 KEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSL 384

           KE+  M  DD++G + GF  +I  +FLL+AF+D+  SL

Sbjct: 482 KEFTHMRFDDILGDVCGFLIVITAVFLLNAFRDIDISL 369

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 31718234

Number of Sequences: 13830

Number of extensions: 468438

Number of successful extensions: 18035

Number of sequences better than 1.0e-003: 1

length of query: 473

length of database: 3,170,091

effective HSP length: 46

effective length of query: 427

effective length of database: 2,533,911

effective search space: 1081979997

effective search space used: 1081979997

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 81 (40.0 bits)