TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S1090772 Homo sapiens mRNA for KIAA0652 protein,

complete cds /cds=(308,1861) /gb=AB014552 /gi=3327117 /ug=Hs.79672

/len=4040

         (4040 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>2174_1 EST composition (unordered) :

           LD09558.5prime,GM10455.5prime,SD03174.5prime

           Length = 593

          

 Score = 49.2 bits (101), Expect(3) = 7e-018

 Identities = 19/30 (63%), Positives = 26/30 (86%)

 Frame = +3 / +2

 

                                        

Query: 339 KDLDKFIKFFALKTVQVIVQARLGEKICTR 428

           +DL+KFIKF  LK+ QV+VQ+RLGEK+ T+

Sbjct: 323 RDLEKFIKFLVLKSTQVVVQSRLGEKMQTQ 412

 

 

 Score = 42.3 bits (86), Expect(3) = 7e-018

 Identities = 15/23 (65%), Positives = 19/23 (82%)

 Frame = +3 / +2

 

                                 

Query: 447 GSDWFNLAIKDIPEVTHEAKKAL 515

           GSDWFN+A++D PEV  E K+AL

Sbjct: 428 GSDWFNIAVQDHPEVLDETKRAL 496

 

 

 Score = 37.3 bits (75), Expect(3) = 7e-018

 Identities = 14/19 (73%), Positives = 17/19 (88%)

 Frame = +3 / +2

 

                             

Query: 546 MCVEISLKTSEGDSMELEI 602

           +CVEISLKT+EGD M LE+

Sbjct: 536 LCVEISLKTTEGDQMVLEV 592

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 114457679

Number of Sequences: 13830

Number of extensions: 2185602

Number of successful extensions: 116052

Number of sequences better than 1.0e-003: 1

length of query: 1346

length of database: 3,170,091

effective HSP length: 49

effective length of query: 1297

effective length of database: 2,492,421

effective search space: 3232670037

effective search space used: 3232670037

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 85 (41.8 bits)