TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S512817 35d4 Homo sapiens cDNA /gb=W27625 /gi=1307573

/ug=Hs.74284 /len=682

         (682 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

5923_1 EST composition (unordered) : GM05443.5prime,GM03770.5pr...    73  4e-014

 

>1190_1 EST composition (unordered) :

           LD09532.5prime,LD12380.5prime,LD44609.5prime,

           LD09831.5prime,LD07016.5prime,LD21581.5prime,

           LD11237.5prime,LD13663.5prime,LD05772.5prime,

           LD12107.5prime,GH23314.3prime,LD21581.3prime

           Length = 1591

          

 Score = 41.4 bits (84), Expect(4) = 4e-035

 Identities = 16/30 (53%), Positives = 19/30 (63%)

 Frame = +1 / +3

 

                                        

Query: 67  QPPARLISGEEHFSSKKCLAWFYEYAGPDE 156

           Q   R I  E+ FS K+C+AWF EY  PDE

Sbjct: 264 QSSRRHIRLEDGFSQKRCMAWFQEYTTPDE 353

 

 

 Score =  105 bits (224), Expect(4) = 4e-035

 Identities = 42/77 (54%), Positives = 54/77 (69%)

 Frame = +1 / +3

 

                                                                       

Query: 154 EVVGPEGMEKFXEDIGVXPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSSQCDCTEKLQ 333

           E +GP+GMEKF EDIGV PENI+MLVLA+K+ A  MGFF+++EWLKG+T   CD   K+

Sbjct: 357 ETLGPDGMEKFCEDIGVEPENIVMLVLAYKMGATQMGFFSQQEWLKGLTELDCDSAAKMV 536

 

                           

Query: 334 NKFDFWRSQLNDISPFK 384

            K D+ R      +P K

Sbjct: 537 VKLDYLRRYSTIPTPLK 587

 

 

 Score = 31.3 bits (62), Expect(4) = 4e-035

 Identities = 12/19 (63%), Positives = 14/19 (73%)

 Frame = +1 / +2

 

                              

Query: 361 LNDISPFKNIYRYAXDLGK 417

           LND + FK+IYRYA D  K

Sbjct: 563 LNDPNSFKSIYRYAYDFAK 619

 

 

 Score = 26.3 bits (51), Expect(4) = 4e-035

 Identities = 10/17 (58%), Positives = 14/17 (81%)

 Frame = +2 / +2

 

                            

Query: 410 WARDKDQRSLDIDTAKS 460

           +A+D DQR +DI TAK+

Sbjct: 611 FAKDSDQRCMDILTAKA 661

 

 

 Score = 58.8 bits (122), Expect = 1e-009

 Identities = 28/60 (46%), Positives = 37/60 (61%)

 Frame = -3 / -1

 

                                                                       

Query: 353 RQKSNLFCNFSVQSHCDEVIPFNHSSLVKNPMLSASNFHAKTNIIIFSGSTPMSSXNFSI 174

           R+ SN    F+ +S    V PF+HS  +K P+  A    A T+I IFSGSTP+SS NFS+

Sbjct: 556 RR*SNFTTIFAAESQSSSVRPFSHSCWLKKPIWVAPIL*ASTSITIFSGSTPISSQNFSM 377

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 12540872

Number of Sequences: 13830

Number of extensions: 154775

Number of successful extensions: 6112

Number of sequences better than 1.0e-003: 2

length of query: 227

length of database: 3,170,091

effective HSP length: 44

effective length of query: 182

effective length of database: 2,561,571

effective search space: 466205922

effective search space used: 466205922

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)