TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S344259 yw97d01.r1 Homo sapiens cDNA, 5' end

/clone=IMAGE:260161 /clone_end=5' /gb=N45386 /gi=1186552 /ug=Hs.7001

/len=621

         (621 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

3989_1 EST composition (unordered) : GH06641.5prime                   51  4e-019

3989_2 EST composition (unordered) : GH21687.5prime,LD02593.5pr...    51  5e-019

 

>3989_1 EST composition (unordered) : GH06641.5prime

           Length = 602

          

 Score = 51.5 bits (106), Expect(4) = 4e-019

 Identities = 20/30 (66%), Positives = 21/30 (69%)

 Frame = +1 / +3

 

                                        

Query: 4   GKNMFDXPGNCLLICKXTSQRIACPRPTAK 93

           GK     P NCLLICK +SQRIACPRP  K

Sbjct: 243 GKKYVRCPCNCLLICKSSSQRIACPRPNCK 332

 

 

 Score = 24.9 bits (48), Expect(4) = 4e-019

 Identities = 11/21 (52%), Positives = 11/21 (52%)

 Frame = +3 / +3

 

                               

Query: 75  PSAYCKRIINLGPVHPGPLSP 137

           P   CKRIINL P    P  P

Sbjct: 315 PRPNCKRIINLAPSPVTPPVP 377

 

 

 Score = 29.9 bits (59), Expect(4) = 4e-019

 Identities = 9/16 (56%), Positives = 12/16 (74%)

 Frame = +3 / +3

 

                          

Query: 159 RVICGHCKNTFLWTEF 206

           RV CGHC +TFL+  +

Sbjct: 396 RVTCGHCSDTFLFNTY 443

 

 

 Score = 43.2 bits (88), Expect(4) = 4e-019

 Identities = 14/23 (60%), Positives = 18/23 (77%)

 Frame = +3 / +3

 

                                 

Query: 219 LARCPHCRKVSSIGRRYPRKRCI 287

           LARCPHC+KVSS+G R+   R +

Sbjct: 453 LARCPHCKKVSSVGSRFANSRAV 521

 

 

 Score = 25.8 bits (50), Expect(3) = 5e-004

 Identities = 10/14 (71%), Positives = 11/14 (78%)

 Frame = -3 / -2

 

                        

Query: 259 PIDDTFLQ*GQRAK 218

           P D+TFLQ G RAK

Sbjct: 493 PTDETFLQCGHRAK 452

 

 

 Score = 19.8 bits (37), Expect(3) = 5e-004

 Identities = 10/17 (58%), Positives = 10/17 (58%)

 Frame = -3 / -2

 

                           

Query: 136 GLRGPGCTGPRLMILLQ 86

           G  G    G RLMILLQ

Sbjct: 376 GTGGVTGLGARLMILLQ 326

 

 

 Score = 31.8 bits (63), Expect(3) = 5e-004

 Identities = 14/28 (50%), Positives = 16/28 (57%)

 Frame = -2 / -2

 

                                      

Query: 86  VGRGHAIRWDVXLQIRRQLPGXSNIFFP 3

           +G G AIR D  LQI +QL G    F P

Sbjct: 325 LGLGQAIRCDELLQINKQLHGQRTYFLP 242

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 19497159

Number of Sequences: 13830

Number of extensions: 371008

Number of successful extensions: 18053

Number of sequences better than 1.0e-003: 2

length of query: 207

length of database: 3,170,091

effective HSP length: 44

effective length of query: 162

effective length of database: 2,561,571

effective search space: 414974502

effective search space used: 414974502

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 78 (38.6 bits)