TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S433985 zh69b03.s1 Homo sapiens cDNA, 3' end

/clone=IMAGE:417293 /clone_end=3' /gb=W89120 /gi=1404482 /ug=Hs.65135

/len=610

         (610 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

 

>4628_1 EST composition (unordered) : SD08833.5prime,LD22460.5prime

           Length = 741

          

 Score = 41.8 bits (85), Expect = 1e-004

 Identities = 21/48 (43%), Positives = 22/48 (45%)

 Frame = +2 / -3

 

                                                          

Query: 353 CRMSLNCIMPMAFRQKALRALRIAFTKSS*SAEFR*IKRWWMYCMYAC 496

           C  SLNC  P     KA RA       SS*S   R*    WM+ MY C

Sbjct: 352 CSQSLNCAFPSGVIWKAARAATTMLANSS*SPWVR*YSF*WMHWMYIC 209

 

 

 Score = 63.8 bits (133), Expect = 3e-011

 Identities = 25/61 (40%), Positives = 40/61 (64%)

 Frame = -2 / +3

 

                                                                      

Query: 513 LVQRXQQAYMQYIHHRLIHLNSADYDDFVNAIRSARSAFCLNAMGMMQFNDILQNLQAQQ 334

           LVQ+ QQ Y+Q IH +L HL   DY++F + + +AR+AF +   G  QF D LQ+++  +

Sbjct: 192 LVQKCQQMYIQCIHQKLYHLTQGDYEEFASIVVAARAAFQITPEGNAQFKDWLQSIKRSK 371

 

           

Query: 333 T 331

           +

Sbjct: 372 S 374

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 17010439

Number of Sequences: 13830

Number of extensions: 302938

Number of successful extensions: 19519

Number of sequences better than 1.0e-003: 1

length of query: 203

length of database: 3,170,091

effective HSP length: 44

effective length of query: 158

effective length of database: 2,561,571

effective search space: 404728218

effective search space used: 404728218

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 78 (38.6 bits)