TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S1065049 oy90e07.x1 Homo sapiens cDNA, 3' end
/clone=IMAGE:1673124 /clone_end=3'
/gb=AI056225 /gi=3330091
/ug=Hs.42743
/len=721
(721 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
|
|
Score
E
Sequences producing significant
alignments:
(bits)
Value
2882_1
EST composition (unordered) : GH19015.5prime,LD46621.5pr... 80 4e-016
>2882_1 EST composition
(unordered) :
GH19015.5prime,LD46621.5prime,LD12963.5prime,
LD15378.5prime
Length = 627
Score = 80.3 bits (169), Expect =
4e-016
Identities = 33/53 (62%), Positives =
39/53 (73%)
Frame = -1 / +1
Query:
721 MTQPGRPTFEPARGGGGKEKGDLSQLSKQYSSRDXPFHTKIKSRQTTQDAPEE
563
MT RPTF+PARGG G+ + DLS
LSKQYSSRD P HTK+K R+T Q
+E
Sbjct:
88
MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGTSDE
246
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 14933101
Number
of Sequences: 13830
Number
of extensions: 189716
Number
of successful extensions: 7074
Number
of sequences better than 1.0e-003: 1
length
of query: 240
length
of database: 3,170,091
effective HSP length:
44
effective length of query:
195
effective length of database:
2,561,571
effective search space:
499506345
effective search space used:
499506345
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 79
(39.1 bits)