TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S538815 zo37d09.s1 Homo sapiens cDNA, 3' end
/clone=IMAGE:589073 /clone_end=3'
/gb=AA151343 /gi=1719698
/ug=Hs.12677
/len=563
(563 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
|
|
Score
E
Sequences producing significant
alignments:
(bits)
Value
122_1
EST composition (unordered) : GH11285.5prime,LD46144.5pri... 139 3e-034
>122_1 EST composition
(unordered) :
GH11285.5prime,LD46144.5prime,LD38416.5prime,
LD07730.5prime,LD34990.5prime,HL07873.5prime,
LD13743.5prime,GH02525.5prime,GH02513.5prime,
LD32081.5prime,LD15033.5prime,GH15915.5prime,
GM08703.5prime,GH11772.5prime,SD01517.3prime
Length = 867
Score = 51.0 bits (105), Expect(2) =
5e-009
Identities = 32/79 (40%), Positives =
41/79 (51%)
Frame = +2 / -1
Query:
140 SFR*PVTLSIRSAGPGPIPRTV*EPGAI*VRPAS*IKLTVSPSIFAWANNAIRVSSSGAL
319
+FR PVT S+ +A GP TV E +I VRPAS ++ S + A AI +S
Sbjct:
633 NFRWPVTRSMSAAAAGPTASTVLELASICVRPASRMRHVFSCCLSASFLMAISSASLSTR
454
Query:
320 TTTLGWPQYSHCLSISGFL 376
T L PQ+SH S
G L
Sbjct:
453 TAILAQPQFSHDRSSRGVL 397
Score = 24.9 bits (48), Expect(2) =
5e-009
Identities = 8/18 (44%), Positives =
14/18 (77%)
Frame = +1 / -3
Query:
418 LGSHFPLSHL*VXSNHQE 471
LG +F L+HL + ++HQ+
Sbjct:
355 LGGNFALAHLEIVAHHQD 302
Score = 139 bits (299), Expect =
3e-034
Identities = 60/110 (54%), Positives =
74/110 (66%)
Frame = -3 / +2
Query:
468 LVVRXDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIA
289
LVVR DLKMGKGK+AAQC H AV AY++
R P +L+ WE CG K+ V+ E L+A
Sbjct:
305 LVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVESEAELMA
484
Query:
288 LLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 139
+ A+ L LI+DAGRTQI S+TVL +GP A
ID+VTGHLKL
Sbjct:
485 IKKEAERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKL 634
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 14334738
Number
of Sequences: 13830
Number
of extensions: 215826
Number
of successful extensions: 10299
Number
of sequences better than 1.0e-003: 1
length
of query: 187
length
of database: 3,170,091
effective HSP length:
44
effective length of query:
143
effective length of database:
2,561,571
effective search space:
366304653
effective search space used:
366304653
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 78
(38.6 bits)