TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S511899 22g11 Homo sapiens cDNA /gb=W27076

/gi=1306655 /ug=Hs.122666 /len=722

         (722 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>2647_1 EST composition (unordered) :

           LD35118.5prime,LD37178.5prime,LD33905.5prime,

           LD18161.5prime,LD11768.5prime,LD37812.5prime,

           LD23868.5prime,LD17263.5prime,LD24622.5prime,

           GH07639.5prime,GH03491.5prime,HL01634.5prime,

           LD23616.5prime,LD33145.5prime,HL01629.5prime,

           LD15726.5prime,LD15728.5prime,LD30084.5prime,

           LP01440.5prime,LP01428.5prime

           Length = 995

          

 Score = 74.4 bits (156), Expect = 2e-014

 Identities = 28/63 (44%), Positives = 44/63 (69%)

 Frame = +1 / +3

 

                                                                       

Query: 148 SPPRFVTVEELLETARGVANMALAHEIVVNGDFQIXPVELPENSLKKRVKEIVHKAFWGL 327

           +PP+ VT++E+    + + NM LAHEI +N DF++   E P +SL+  +K++VHKAFW L

Sbjct: 594 TPPKIVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVHKAFWDL 773

 

             

Query: 328 LEL 336

           L +

Sbjct: 774 LRV 782

 

 

 Score = 41.4 bits (84), Expect = 2e-004

 Identities = 26/61 (42%), Positives = 30/61 (48%)

 Frame = -1 / -2

 

                                                                       

Query: 329 SNPQNALCTISFTLFFKLFSGNSTGLI*KSPFTTISWARAMLATPLAVSRSSSTVTKRGG 150

           S  Q ALCTI      KL  G S     KS    ISWA +ML   L +  +SS VT  GG

Sbjct: 775 SRSQKALCTIFLMAPSKLSEGGSYFCSLKSGLRAISWASSMLRKFLNMLDTSSRVTIFGG 596

 

           

Query: 149 L 147

           +

Sbjct: 595 V 593

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 10970757

Number of Sequences: 13830

Number of extensions: 128728

Number of successful extensions: 4632

Number of sequences better than 1.0e-003: 1

length of query: 240

length of database: 3,170,091

effective HSP length: 44

effective length of query: 196

effective length of database: 2,561,571

effective search space: 502067916

effective search space used: 502067916

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)