TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S1367581 Homo sapiens mRNA for KIAA0831 protein,

complete cds /cds=(576,1715) /gb=AB020638 /gi=4240150 /ug=Hs.103000

/len=4943

         (4943 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>9617_1 EST composition (unordered) : GH07807.5prime

           Length = 611

          

 Score = 27.2 bits (53), Expect(3) = 4e-025

 Identities = 8/15 (53%), Positives = 13/15 (86%)

 Frame = +1 / +3

 

                         

Query: 946 LAEARRTTYLSGRWV 990

           LA+A+ T+Y+ G+WV

Sbjct: 18  LADAKNTSYIRGKWV 62

 

 

 Score = 33.6 bits (67), Expect(3) = 4e-025

 Identities = 11/19 (57%), Positives = 14/19 (72%)

 Frame = +1 / +3

 

                              

Query: 1042 SLPNNGDYSAYYSWVEEKK 1098

            SLP NGDY+AY  W+ + K

Sbjct: 111  SLPANGDYTAYLDWLADNK 167

 

 

 Score = 93.2 bits (197), Expect(3) = 4e-025

 Identities = 40/98 (40%), Positives = 59/98 (59%)

 Frame = +1 / +3

 

                                                                       

Query: 1135 AYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLC 1314

            AY I  AL Y  QL  +LS  L+V LP K+   +FC + L++++F R + +LN+NI+YL

Sbjct: 219  AYRIVGALTYTAQLTQLLSFYLNVRLPHKIAYGDFCRKLLNEEQFRRKISRLNSNIMYLA 398

 

                                                 

Query: 1315 FSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEV 1428

            ++Q V L  L   HTL NL+ ++      LGR G  +V

Sbjct: 399  YTQQVKLRALIEQHTLENLLAILDLERSDLGRYGHLDV 512

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 126174951

Number of Sequences: 13830

Number of extensions: 2127668

Number of successful extensions: 91389

Number of sequences better than 1.0e-003: 1

length of query: 1647

length of database: 3,170,091

effective HSP length: 50

effective length of query: 1597

effective length of database: 2,478,591

effective search space: 3958309827

effective search space used: 3958309827

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 86 (42.3 bits)