TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S1090812 Homo sapiens mRNA for KIAA0692 protein,
partial
cds /cds=(0,2353) /gb=AB014592 /gi=3327197 /ug=Hs.100729
/len=4088
(4088 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
Score
E
Sequences producing significant
alignments:
(bits)
Value
1755_2 EST composition (unordered)
: LD11281.5prime,GH14580.5pr... 73 5e-013
10347_1
EST composition (unordered) : GH13043.5prime
72
1e-012
2496_4
EST composition (unordered) : GM03542.5prime
33
9e-005
>1755_2 EST composition
(unordered) :
LD11281.5prime,GH14580.5prime,LD17956.3prime,
LD12318.5prime,LD07771.5prime,LD41835.5prime,
HL02846.5prime,HL03454.5prime,SD04306.5prime,
LD45996.5prime,LD45457.5prime
Length = 1078
Score = 72.5 bits (152), Expect =
5e-013
Identities = 26/55 (47%), Positives =
35/55 (63%)
Frame = +3 / +1
Query:
453 TQDLTAKLRKAVEKGEEDTFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAK
617
T+ + RK +E
G D +IW NPR+LI SGD PT ++EGCRYN
MH+ +
Sbjct:
820 TKQELVEFRKQIEGGHIDRVKRIIWENPRFLISSGDTPTSLKEGCRYNAMHICGQ
984
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 112115142
Number
of Sequences: 13830
Number
of extensions: 2057306
Number
of successful extensions: 99135
Number
of sequences better than 1.0e-003: 3
length
of query: 1362
length
of database: 3,170,091
effective HSP length:
49
effective length of query:
1313
effective length of database:
2,492,421
effective search space:
3272548773
effective search space used:
3272548773
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 85 (41.8 bits)