TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S1367507 H.sapiens gene from PAC 295C6, similar to

rat PO44 /cds=(159,542) /gb=AL035304 /gi=4200231 /ug=Hs.76285 /len=798

         (798 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

11524_1 EST composition (unordered) : GH23618.5prime,LP04651.5p...   133  6e-032

9955_1 EST composition (unordered) : GH10244.5prime,GH11857.5pr...    50  5e-007

 

>8945_1 EST composition (unordered) :

           GH03552.3prime,GH21387.5prime,GH28330.5prime

           Length = 698

          

 Score =  145 bits (312), Expect = 8e-036

 Identities = 57/107 (53%), Positives = 74/107 (68%)

 Frame = +1 / +1

 

                                                                      

Query: 196 YHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQS 375

           Y+ ++   +  +P KLRPL+ HPAGP+T+FFWAP+ KWGLV AGL+D+ARPA+ +S + 

Sbjct: 181 YNGMIGAADKFVPAKLRPLWMHPAGPKTIFFWAPVFKWGLVAAGLSDLARPADTISVSGC 360

 

                                                         

Query: 376 AVLMATGFIWSRYSLVIIPKNWSLXXXXXXXXXXXXSQLFRIWRYNQ 516

           A L ATG IWSRYSLVIIPKN+SL             QL R + Y+Q

Sbjct: 361 AALAATGIIWSRYSLVIIPKNYSLFAVNLFVGITQVVQLARAYHYHQ 501

 

 

 Score = 86.3 bits (182), Expect = 7e-018

 Identities = 41/75 (54%), Positives = 48/75 (63%)

 Frame = -2 / -1

 

                                                                       

Query: 470 PTKKLTANRLQFFGIITSEYLDQINPVAIKTAD*AVLSFSAGLAISANPAHTNPHFIIGA 291

           PTK+ TANRL F G+ITSE  DQ+ PVA + A       SAG A S  PA T PH   GA

Sbjct: 455 PTKRFTANRL*FLGMITSE*RDQMMPVAARAAHPDTEMVSAGRAKSLRPAATRPHLKTGA 276

 

                          

Query: 290 QKKTVLGPAGWLYNG 246

           QK  VLGPAG +++G

Sbjct: 275 QKNIVLGPAGCIHSG 231

 

 

 Score = 44.1 bits (90), Expect = 3e-005

 Identities = 23/65 (35%), Positives = 33/65 (50%)

 Frame = -1 / -3

 

                                                                       

Query: 348 RSGHISQSSTHQPPFHNWSPEENCSGTCWMVVQRPQFLGQHQLHFIEEPVVGGPQASGTG 169

           RSG ++Q+  ++ PF +  P+E   GT WM  Q PQ  G   +     PVV     + +G

Sbjct: 333 RSGQVTQAGGNETPFEDGCPKEYRLGTSWMHPQWPQLGGHKFVGGANHPVVQLGVDALSG 154

 

               

Query: 168 GRHRR 154

           GR  R

Sbjct: 153 GRDGR 139

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 21980120

Number of Sequences: 13830

Number of extensions: 407679

Number of successful extensions: 22049

Number of sequences better than 1.0e-003: 4

length of query: 266

length of database: 3,170,091

effective HSP length: 45

effective length of query: 220

effective length of database: 2,547,741

effective search space: 560503020

effective search space used: 560503020

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)