TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S376139 Human mRNA for KIAA0193 gene, complete cds

/cds=(352,1392) /gb=D83777 /gi=1228036 /ug=Hs.75137 /len=5076

         (5076 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

2803_2 EST composition (unordered) : LD12576.5prime,LD30995.5pr...    53  4e-010

 

>2803_2 EST composition (unordered) :

           LD12576.5prime,LD30995.5prime,LP08956.5prime,

           LD40059.5prime,LD01135.5prime,LD16309.5prime,

           LD46496.5prime,LP06634.5prime

           Length = 711

          

 Score = 53.3 bits (110), Expect(2) = 4e-010

 Identities = 24/63 (38%), Positives = 35/63 (55%)

 Frame = +2 / +2

 

                                                                      

Query: 374 LWGAEMGANEHGVCIANEAINTREPAAEIEALLGMDLVRLGLERGETAKEALDVIVSLLE 553

           LWG + GANE GV +          A + ++LLG D+VRL L   +   +A+D I +L+

Sbjct: 290 LWGGDFGANERGVALGLTWAAGENEAKDSDSLLGTDIVRLTLAVAKDVDDAVDRIGALVA 469

 

             

Query: 554 EHG 562

            HG

Sbjct: 470 SHG 478

 

 

 Score = 29.9 bits (59), Expect(2) = 4e-010

 Identities = 10/24 (41%), Positives = 15/24 (61%)

 Frame = +2 / +2

 

                                   

Query: 617 YLIVDRDEAWVLETIGKYWAAEKV 688

           ++  D   AW++   GK WAAEK+

Sbjct: 500 FIACDAAAAWLVSCSGKVWAAEKL 571

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 139843393

Number of Sequences: 13830

Number of extensions: 2536801

Number of successful extensions: 108209

Number of sequences better than 1.0e-003: 1

length of query: 1692

length of database: 3,170,091

effective HSP length: 50

effective length of query: 1641

effective length of database: 2,478,591

effective search space: 4067367831

effective search space used: 4067367831

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 86 (42.3 bits)