TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S1074129 oz36a02.x1 Homo sapiens cDNA, 3' end

/clone=IMAGE:1677386 /clone_end=3' /gb=AI080092 /gi=3416343

/ug=Hs.61614 /len=500

         (500 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>3605_1 EST composition (unordered) : LD17191.5prime

           Length = 489

          

 Score = 57.9 bits (120), Expect = 1e-009

 Identities = 22/50 (44%), Positives = 31/50 (62%)

 Frame = -1 / +2

 

                                                            

Query: 500 LTGIGPKSIPKKMIEGLYKYNSDRKQFSHIPAKTLSASVDAITIHSHLWQ 351

           L G GP  + + M +  +KYNS  K FS +  K L+ ++DA TIH+ LWQ

Sbjct: 236 LYGTGPSQVEEVMFDKFFKYNSGGKCFSQVHTKHLTVTIDAFTIHNSLWQ 385

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 10862143

Number of Sequences: 13830

Number of extensions: 139909

Number of successful extensions: 4395

Number of sequences better than 1.0e-003: 1

length of query: 166

length of database: 3,170,091

effective HSP length: 43

effective length of query: 123

effective length of database: 2,575,401

effective search space: 316774323

effective search space used: 316774323

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 78 (38.6 bits)