TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S1263835 Homo sapiens mRNA for KIAA0776 protein,
partial
cds /cds=(0,2401) /gb=AB018319 /gi=3882272 /ug=Hs.5460
/len=4174
(4174 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
Score
E
Sequences producing significant
alignments:
(bits)
Value
12370_1
EST composition (unordered) : LD37409.5prime,LD41292.5p... 199 3e-051
10033_1
EST composition (unordered) : GH10892.5prime
90
4e-025
11003_1
EST composition (unordered) : LD34559.3prime
37
4e-006
>12370_1 EST composition
(unordered) :
LD37409.5prime,LD41292.5prime,SD08056.5prime
Length = 682
Score = 199 bits (429), Expect =
3e-051
Identities = 82/165 (49%), Positives =
116/165 (69%)
Frame = +3 / +3
Query:
3
ASQAVMADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKE
182
A+ M W+EI+RLAADFQ+AQ Q+LSERNC+EIV L+ ++ LEVV T DGKE
Sbjct:
111 ANHNKMGSDWDEIKRLAADFQKAQLTSTLQKLSERNCVEIVTLLLEKQMLEVVFTNDGKE
290
Query:
183 YITPAQISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLI
362
YITP + +E++DEL+V GGR N+V++ +
+NVDL IE I + V
LVLGQLI
Sbjct:
291 YITPDHLEREIQDELYVNGGRANLVEVSKTLNVDLSRIELLAERISAENQSVHLVLGQLI
470
Query:
363 DENYLDRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQR 497
DE+Y+ +A+E+N+KL +
G+V+ISEL +DLP +FL + ++
Sbjct:
471 DEDYISHIAQEINEKLVQRGEVSISELASQFDLPSDFLQHDVVEK 605
Score = 21.7 bits (41), Expect(3) =
1e-021
Identities = 11/18 (61%), Positives =
11/18 (61%)
Frame = -1 / -1
Query:
553 VKITPLLSRSICPLIILP 500
VK TP S PLIILP
Sbjct:
664 VKNTPGFEASWRPLIILP 611
Score = 36.8 bits (74), Expect(3) =
1e-021
Identities = 23/51 (45%), Positives =
29/51 (56%)
Frame = -1 / -1
Query:
487 SACVRKFPGRS*VLHSSDMVT*PLSCNLSLTSSANRSK*FSSISCPNTN*T
335
++C RK GRS +S+M T P + SL S A * SSISCP+T T
Sbjct:
595 TSCCRKSDGRSNWEANSEMETSPR*TSFSLISCAI*LM*SSSISCPSTRCT
443
Score = 83.5 bits (176), Expect(3) =
1e-021
Identities = 48/99 (48%), Positives =
59/99 (59%)
Frame = -1 / -1
Query:
298 SI*IRSTLITCCRSTMFTRPPRTCSSSLISLLIWAGVIYSFPSSV*TTSSCF*AINLLTI
119
SI +ST ST RPP T +SS IS +GV+YS PS V TTSS + + +TI
Sbjct:
406 SIRDKSTFRVLLTSTKLARPPFTYNSSWISRSR*SGVMYSLPSLVNTTSSICFSSSSVTI
227
Query:
118 SMQFRSDNLCVASANCARWKSAANRLISSQASAITA*LA 2
S QFRS++ C
+CA KSAA RLISSQ+ I
* A
Sbjct:
226 STQFRSESFCSVDVSCAF*KSAAKRLISSQSLPILL*FA 110
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 89548023
Number
of Sequences: 13830
Number
of extensions: 1330767
Number
of successful extensions: 50167
Number
of sequences better than 1.0e-003: 3
length
of query: 1391
length
of database: 3,170,091
effective HSP length:
49
effective length of query:
1341
effective length of database:
2,492,421
effective search space:
3342336561
effective search space used:
3342336561
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 85
(41.8 bits)