TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S908281 ai08e02.s1 Homo sapiens cDNA, 3' end

/clone=1342202 /clone_end=3' /gb=AA725071 /gi=2742778 /ug=Hs.5298

/len=828

         (828 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

4813_1 EST composition (unordered) : GH04812.5prime,GH04343.5pr...    65  2e-011

>4813_1 EST composition (unordered) :

           GH04812.5prime,GH04343.5prime,LD24344.5prime,

           GH19392.5prime

           Length = 923

          

 Score = 64.8 bits (135), Expect = 2e-011

 Identities = 29/68 (42%), Positives = 39/68 (56%)

 Frame = -1 / +3

 

                                                                       

Query: 828 KVFFGMIFLGCSARPNFSWAFHTAYCHFGGVFSTFPQRELFRDAPLILGSFVPRLFYSFY 649

           K+ FG  F+G      FS+AFHT  CH   +   F + +    A LI+GSFVP L+Y FY

Sbjct: 513 KIVFGAFFIGAIVCLGFSFAFHTLSCHSVEMGRLFSKLDYCGIALLIMGSFVPWLYYGFY 692

 

                  

Query: 648 APPQPRLI 625

              QP++I

Sbjct: 693 CHYQPKVI 716

 

 

 Score = 40.0 bits (81), Expect = 6e-004

 Identities = 18/59 (30%), Positives = 28/59 (46%)

 Frame = -3 / +2

 

                                                                     

Query: 820 FWNDFFGVQCSPQLLVGFSHXXXXXXXXXXXXSPTGTIQGCSSNFGELCPPALLFLLRS 644

           FW   +   C P++L+ FSH              T  +  C+++ G LC  A+L+LL S

Sbjct: 521 FWRLLYRCDCVPRILIRFSHTELSFCRDGKTVF*T*LLWNCAADHGFLCALAVLWLLLS 697

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 23303586

Number of Sequences: 13830

Number of extensions: 433496

Number of successful extensions: 22389

Number of sequences better than 1.0e-003: 1

length of query: 276

length of database: 3,170,091

effective HSP length: 45

effective length of query: 230

effective length of database: 2,547,741

effective search space: 585980430

effective search space used: 585980430

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)