TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S1313560 PT1.3_03_F02.r Homo sapiens cDNA, 5'
end
/clone_end=5' /gb=AI525591
/gi=4439726 /ug=Hs.49698 /len=992
(992 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
|
|
Score
E
Sequences producing significant
alignments:
(bits)
Value
6281_1
EST composition (unordered) : GH05130.5prime,GH16488.5pr... 154 3e-038
>6281_1 EST composition
(unordered) :
GH05130.5prime,GH16488.5prime,GH25036.5prime,
GH05130.3prime,GM12493.5prime,LD30793.5prime,
GH08550.5prime,LD38880.5prime,SD04385.3prime
Length = 1268
Score = 154 bits (330), Expect =
3e-038
Identities = 62/110 (56%), Positives =
82/110 (74%)
Frame = +3 / +3
Query:
105 KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQL
284
KSIQH L+ AQEHD RD V+AY+ RLYA+Q G+K
++T E K L +MD LE +KKQ
Sbjct:
111 KSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTGEETKLLLGIMDWLEQMKKQY
290
Query:
285 GDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLL 434
+NEAIT E+
AH+ENYALK+FLYAD +DR F
KN++K+FY++ +L
Sbjct:
291 AENEAITNEVAAQAHIENYALKLFLYADKQDREENFGKNVVKAFYSSGVL 440
Score = 64.8 bits (135), Expect =
3e-011
Identities = 45/103 (43%), Positives =
53/103 (50%)
Frame = -2 / -2
Query:
418 *KDLIMFL*NRPARSSLSAYKNIFKA*FSKWAQPTIS*VIASLSPNCFFRASN*SINFDK
239
*K L F +RS LSAY+N FKA*FS A S V+AS S CFF S+ S+
Sbjct:
424 *KALTTFFPKFSSRSCLSAYRNSFKA*FSMCAWAATSLVMASFSAYCFFICSSQSMMPSS
245
Query:
238 NLRHSGVLLSIFIPVCIAYKRQ**ATTGSRLSCS*AVLR*CCM 110
+L S V + P A *A T SR+SCS A R C M
Sbjct:
244 SLVSSPVWVEALRPTWRA*SLAQ*AMTTSRVSCSWASFRKCWM 116
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 21377568
Number
of Sequences: 13830
Number
of extensions: 297269
Number
of successful extensions: 11843
Number
of sequences better than 1.0e-003: 1
length
of query: 330
length
of database: 3,170,091
effective HSP length:
45
effective length of query:
285
effective length of database:
2,547,741
effective search space:
726106185
effective search space used:
726106185
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 80
(39.6 bits)