TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S514231 55c4 Homo sapiens cDNA /gb=W29030 /gi=1308987

/ug=Hs.4963 /len=758

         (758 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

885_1 EST composition (unordered) : SD09091.5prime,GH23646.5pri...   127  3e-030

 

>885_1 EST composition (unordered) :

           SD09091.5prime,GH23646.5prime,HL01113.5prime,

           GH07532.5prime

           Length = 691

          

 Score =  127 bits (271), Expect = 3e-030

 Identities = 48/99 (48%), Positives = 68/99 (68%)

 Frame = +3 / +2

 

                                                                      

Query: 75  SEVGLIICDIANPASLDEMXKQATVVLNXVGPYRFXGEPXIKACXENGAXCIDISGEPQF 254

           S+  ++I D+ N ASL EM K+  +++N  GPYRF GE  ++AC E G   +D+SGEPQ+

Sbjct: 335 SQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVVRACIEAGTHHVDVSGEPQY 514

 

                                                  

Query: 255 LELMQLKYHXKAADXGVYIIGSRGFDSXPADLGSNIYQK 371

           +E MQL+YH  A + GVY+I + GFDS PAD+G    +K

Sbjct: 515 METMQLRYHDLAKERGVYVISACGFDSIPADMGVTFVEK 631

 

 

 Score = 71.2 bits (149), Expect = 2e-013

 Identities = 43/96 (44%), Positives = 48/96 (49%)

 Frame = -2 / -2

 

                                                                      

Query: 379 SVYFWYILLPRSAGMESKPLLPMIXTPLSAAFX*YFSCISSRN*GSPLMSIXLAPFSXHA 200

           S +F   + P SAGMESKP   +  TP S A     SC+ S   GSPL S    P S  A

Sbjct: 639 SKFFSTKVTPMSAGMESKPHALITYTPRSLARSW*RSCMVSMYCGSPLTST*CVPASMQA 460

 

                                              

Query: 199 FIXGSPXNRYGPTXLRTTVACLXISSSEAGLAISQM 92

               SP NRYGP  L      L ISSS+A L  S M

Sbjct: 459 LTTRSPKNRYGPAVLTKMRQRLAISSSDASLFTSAM 352

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 12290002

Number of Sequences: 13830

Number of extensions: 122322

Number of successful extensions: 4163

Number of sequences better than 1.0e-003: 2

length of query: 252

length of database: 3,170,091

effective HSP length: 45

effective length of query: 207

effective length of database: 2,547,741

effective search space: 527382387

effective search space used: 527382387

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)