TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= >gnl|UG|Hs#S1343552 ts80b10.x1 Homo sapiens cDNA, 3' end

/clone=IMAGE:2237563 /clone_end=3' /gb=AI623305 /gi=4648230

/ug=Hs.46637 /len=593

         (593 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

>1975_2 EST composition (unordered) : GH09647.3prime

           Length = 356

          

 Score = 57.0 bits (118), Expect = 3e-009

 Identities = 24/52 (46%), Positives = 34/52 (65%)

 Frame = -1 / -3

 

                                                              

Query: 503 RQRCFSSKVCVRSRCWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLE 348

           ++R F   V V+S C DA +V+DG  SF FNDGA A + ++ ED L T+ L+

Sbjct: 303 KERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLEVHPEDALLTIALD 148

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 11700777

Number of Sequences: 13830

Number of extensions: 148413

Number of successful extensions: 5897

Number of sequences better than 1.0e-003: 1

length of query: 197

length of database: 3,170,091

effective HSP length: 44

effective length of query: 153

effective length of database: 2,561,571

effective search space: 391920363

effective search space used: 391920363

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 78 (38.6 bits)