TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S796850 ni92b06.s1 Homo sapiens cDNA, 3' end

/clone=IMAGE:984275 /clone_end=3' /gb=AA526820 /gi=2268889

/ug=Hs.28728 /len=666

         (666 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

1651_1 EST composition (unordered) : HL03818.5prime,LD20254.5pr...    58  3e-014

 

>1651_1 EST composition (unordered) :

           HL03818.5prime,LD20254.5prime,LD07268.5prime,

           LD03157.5prime

           Length = 730

          

 Score = 57.9 bits (120), Expect(2) = 3e-014

 Identities = 23/48 (47%), Positives = 34/48 (69%)

 Frame = +3 / +3

 

                                                          

Query: 198 TAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRR 341

           T    VL++EQV +L  ++ E + IHGRGNFPTLE++   +V +VRR+

Sbjct: 465 TQRLAVLSFEQVSKLHDVMDEKVAIHGRGNFPTLEVKLKDLVNLVRRK 608

 

 

 Score = 36.3 bits (73), Expect(2) = 3e-014

 Identities = 15/27 (55%), Positives = 18/27 (66%)

 Frame = +2 / +2

 

                                      

Query: 326 GGAAALAEKRIGVRDVRLNGSAASHVL 406

           GGA       + V+D+RLNG AASHVL

Sbjct: 611 GGAGERRRPXVLVKDIRLNGGAASHVL 691

 

 

 Score = 22.6 bits (43), Expect(2) = 3e-005

 Identities = 11/18 (61%), Positives = 12/18 (66%)

 Frame = -1 / -2

 

                            

Query: 414 SWCRTWLAAEPLRRTSRT 361

           S  +T LAA PLRR S T

Sbjct: 699 SLAKT*LAAPPLRRMSLT 646

 

 

 Score = 40.5 bits (82), Expect(2) = 3e-005

 Identities = 21/42 (50%), Positives = 23/42 (54%)

 Frame = -3 / -1

 

                                                     

Query: 337 RRTTFTIRLGCSSSVGKLPRP*IGMVSLRMPSSRCTCSQFST 212

           RRT  T  L  +SSVGKLPRP +   S     S  TCS  ST

Sbjct: 604 RRTRLTRSLSFTSSVGKLPRPWMATFSSMTSCSLLTCSNDST 479

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 16585889

Number of Sequences: 13830

Number of extensions: 246098

Number of successful extensions: 14997

Number of sequences better than 1.0e-003: 2

length of query: 222

length of database: 3,170,091

effective HSP length: 44

effective length of query: 177

effective length of database: 2,561,571

effective search space: 453398067

effective search space used: 453398067

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)