TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S1429686 wi23d03.x1 Homo sapiens cDNA, 3' end

/clone=IMAGE:2391077 /clone_end=3' /gb=AI739545 /gi=5101526

/ug=Hs.204110 /len=559

         (559 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

 

>8640_1 EST composition (unordered) : GH01786.5prime

           Length = 649

          

 Score = 45.5 bits (93), Expect = 8e-006

 Identities = 24/70 (34%), Positives = 34/70 (48%)

 Frame = +2 / -1

 

                                                                       

Query: 188 SLM*ARSIFIFSFNCFITSKACCFVLLLVFTK*WMSFMALSIRITVYGLFVSGVTHLSAT 367

           S M   S+ I+S    + S   C V L + T+ W SF   S+    YG  VSG TH +AT

Sbjct: 547 SFMRDLSMGIWSLRILMASSVFCLVFLFILTEKWASFRDFSMMEAGYGRRVSGFTHNAAT 368

 

                     

Query: 368 IIAMSLNICS 397

            + +  +  S

Sbjct: 367 ELTILFSCVS 338

 

 

 Score = 38.6 bits (78), Expect = 0.001

 Identities = 19/27 (70%), Positives = 19/27 (70%)

 Frame = +3 / -1

 

                                     

Query: 468 TLFL*QAISKRFPARFIRTTATLVRRI 548

           TLFL*QAIS R P  F  T AT VRRI

Sbjct: 133 TLFL*QAISNRLPPFFSLTMATFVRRI 53

 

 

 Score = 78.5 bits (165), Expect = 9e-016

 Identities = 29/36 (80%), Positives = 34/36 (93%)

 Frame = -1 / +3

 

                                               

Query: 559 PTNQIRLTNVAVVRMKRAGKRFEIACYRNKVVGWRS 452

           PTNQIRLTNVA+VR+K+ GKRFEIACY+NKV+ WRS

Sbjct: 42  PTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRS 149

 

 

 Score = 88.1 bits (186), Expect = 1e-018

 Identities = 38/80 (47%), Positives = 50/80 (62%)

 Frame = -2 / +3

 

                                                                      

Query: 399 LEQMFRDIAIIVADKCVTPETKRPYTVILIERAMKDIHYLVKTNRSTKQQALEVIKQLKE 220

           L+     I   VA  CV PET+RPY   +IE+++KD H+ VK NR+TKQ  LE IK LK+

Sbjct: 336 LDTQLNSIVNSVAALCVNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTLEAIKILKD 515

 

                              

Query: 219 KMKIERAHMRLQFILPVNEG 160

            M IER+ M+L+      EG

Sbjct: 516 HMPIERSRMKLRVSFAGKEG 575

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 12680078

Number of Sequences: 13830

Number of extensions: 167865

Number of successful extensions: 7360

Number of sequences better than 1.0e-003: 1

length of query: 186

length of database: 3,170,091

effective HSP length: 44

effective length of query: 141

effective length of database: 2,561,571

effective search space: 361181511

effective search space used: 361181511

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 78 (38.6 bits)