TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S953220 Human DNA sequence from PAC 257A7 on

chromosome 6p24. Contains two unknown genes and ESTs, STSs and a GSS

/cds=(0,492) /gb=AL008729 /gi=2827472 /ug=Hs.121591 /len=1252

         (1252 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

 

>11632_1 EST composition (unordered) : LP04262.5prime

           Length = 604

          

 Score = 66.1 bits (138), Expect(2) = 2e-044

 Identities = 31/56 (55%), Positives = 37/56 (65%)

 Frame = +2 / -2

 

                                                                  

Query: 140 RRLSQRPTAEELEQRNILKPRNXXXXXXXXXXXXXXLTRKLSQRPTVEELRERKIL 307

           RRLS RPTAEEL +RNILK ++              L RKLS RPTVEEL+E+KI+

Sbjct: 411 RRLSMRPTAEELVERNILKTQSPAEEKKQKEEKKSYLLRKLSFRPTVEELKEKKII 244

 

 

 Score =  130 bits (279), Expect(2) = 2e-044

 Identities = 53/68 (77%), Positives = 59/68 (85%)

 Frame = +2 / -2

 

                                                                      

Query: 293 ERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHL 472

           + K +IRF+DY+EV  A DYDRRADKPWTRLT  DKAAIRKELNEFKS+EM VHE SRHL

Sbjct: 261 KEKKIIRFNDYIEVTQAHDYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMAVHEGSRHL 82

 

                  

Query: 473 TRFHRP*Q 496

           TRFHRP*+

Sbjct: 81  TRFHRP*R 58

 

 

 Score = 59.3 bits (123), Expect(2) = 1e-009

 Identities = 36/67 (53%), Positives = 38/67 (55%)

 Frame = -2 / +2

 

                                                                      

Query: 480 NLVKCLLNS*TSISVLLNSLSSFRMAALSAAVRRVHGLSALRXXXXXXXXXXXSLKRMRI 301

           NLVKC L S T+IS  LNS SS RMAALS  V  VHGLSA R           SL RM 

Sbjct: 74  NLVKCRLPSWTAISEDLNSFSSLRMAALSFGVSLVHGLSARRS*SWACVTSM*SLNRMIF 253

 

                 

Query: 300 FLSRSSS 280

           F   SS+

Sbjct: 254 FSFSSST 274

 

 

 Score = 20.3 bits (38), Expect(2) = 1e-009

 Identities = 10/22 (45%), Positives = 14/22 (63%)

 Frame = -2 / +2

 

                                

Query: 192 KMFLCSSSSAVGLWLSRLRKKS 127

           KM   +SSSAVG   SR  +++

Sbjct: 359 KMLRSTSSSAVGRMDSRRMRRA 424

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 31641095

Number of Sequences: 13830

Number of extensions: 520454

Number of successful extensions: 24868

Number of sequences better than 1.0e-003: 1

length of query: 417

length of database: 3,170,091

effective HSP length: 46

effective length of query: 370

effective length of database: 2,533,911

effective search space: 937547070

effective search space used: 937547070

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 81 (40.0 bits)