TBLASTX
2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F.,
Thomas L. Madden, Alejandro A. Schaffer,
Jinghui
Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped
BLAST and PSI-BLAST: a new generation of protein database
search
programs", Nucleic Acids Res.
25:3389-3402.
Query=
gnl|UG|Hs#S1263851 Homo sapiens mRNA for KIAA0792 protein,
complete cds /cds=(250,2673)
/gb=AB018335 /gi=3882304 /ug=Hs.119387
/len=4074
(4074 letters)
Database:
na_clot.dros
13,830 sequences; 9,510,273 total letters
Score
E
Sequences producing significant
alignments:
(bits)
Value
10416_1 EST composition (unordered)
: GH13794.5prime
87 3e-017
11583_1
EST composition (unordered) : LP05125.5prime
45
1e-004
>10416_1 EST composition
(unordered) : GH13794.5prime
Length = 399
Score = 86.7 bits (183), Expect =
3e-017
Identities = 32/106 (30%), Positives =
59/106 (55%)
Frame = +2 / +1
Query:
1430 KWTVTFAADPEDICWKNLSIQGLRWWLQWLGINXXXXXXXXXXXXPSIILSTMDKFNVTK
1609
+W + FA P+D+ W+NL++ W+L++ +N
P++++S ++
K
Sbjct:
82
QWHLVFAPSPDDLFWENLNVNKSHWYLKFFCVNAVLFLVLFFLSTPAMVVSLLNSRPWVK
261
Query:
1610 PIHALNNPIISQFFPTLLLWSFSALLPSIVYYSTLLESHWTKSGEN 1747
+P+++ F PTL+LW+ SAL+P IV
S H+T+S
+N
Sbjct:
262
ETEGKISPLVADFLPTLMLWTLSALMPVIVAISDKWMRHYTRSKQN 399
Database:
na_clot.dros
Posted date: Nov 24, 1999 11:08
AM
Number of letters in database:
9,510,273
Number of sequences in database: 13,830
Lambda K
H
0.318 0.135 0.401
Matrix:
BLOSUM62
Number
of Hits to DB: 120094156
Number
of Sequences: 13830
Number
of extensions: 2409646
Number
of successful extensions: 144299
Number
of sequences better than 1.0e-003: 2
length
of query: 1358
length
of database: 3,170,091
effective HSP length:
49
effective length of query:
1308
effective length of database:
2,492,421
effective search space:
3260086668
effective search space used:
3260086668
frameshift window, decay const:
50, 0.1
T:
13
A:
40
X1: 16
( 7.3 bits)
X2: 0 (
0.0 bits)
S1: 41
(21.7 bits)
S2: 85 (41.8 bits)