TBLASTX 2.0.10 [Aug-26-1999]

 

 

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),

"Gapped BLAST and PSI-BLAST: a new generation of protein database search

programs",  Nucleic Acids Res. 25:3389-3402.

 

Query= gnl|UG|Hs#S472095 zf65b11.s1 Homo sapiens cDNA, 3' end

/clone=IMAGE:381789 /clone_end=3' /gb=AA058854 /gi=1551661

/ug=Hs.107387 /len=652

         (652 letters)

 

Database: na_clot.dros

           13,830 sequences; 9,510,273 total letters

 

 

 

                                                                   Score     E

Sequences producing significant alignments:                        (bits)  Value

 

 

>1934_2 EST composition (unordered) :

           LD21829.5prime,LD08506.5prime,HL01167.5prime,

           LD30685.5prime,GH12937.5prime,GH13560.5prime,

           LD40037.5prime,SD05249.5prime

           Length = 688

          

 Score = 84.0 bits (177), Expect(2) = 7e-029

 Identities = 34/78 (43%), Positives = 52/78 (66%)

 Frame = +3 / +2

 

                                                                      

Query: 27  RVEGKLRASXRKGDYYEAHQMYRTLFFRYMSQSKHTEARELMYSGALLFFSHGQQNSAAD 206

           RV  KL  S   G++YEAH MYRTL+FRY +Q ++ +  EL++ GA    +  Q++SAAD

Sbjct: 188 RVLAKLSQSLAGGEFYEAHMMYRTLYFRYTAQKRYQDCLELLFDGAQQLIAKEQESSAAD 367

 

                            

Query: 207 LSMLVLESLEKAEVEVAD 260

           L +L++++LEK   +  D

Sbjct: 368 LCLLLVDTLEKRGPQAED 421

 

 

 Score = 59.3 bits (123), Expect(2) = 7e-029

 Identities = 22/55 (40%), Positives = 30/55 (54%)

 Frame = +3 / +2

 

                                                                 

Query: 315 ERVTFVSRALKWXXXXXXKLGHPRLHQLLALTLWKEQNYCESRYHFLHSADGEGC 479

           ER T + R +KW      + GHP LH+L+A   W E N   +R+H+L   DG  C

Sbjct: 488 ERETLIQRTIKWSTALHGQYGHPVLHKLIAHVFWTEGNIESARHHYLLCQDGSLC 652

 

 

  Database: na_clot.dros

    Posted date:  Nov 24, 1999 11:08 AM

  Number of letters in database: 9,510,273

  Number of sequences in database:  13,830

 

Lambda     K      H

   0.318    0.135    0.401

 

 

Matrix: BLOSUM62

Number of Hits to DB: 18372632

Number of Sequences: 13830

Number of extensions: 337386

Number of successful extensions: 22578

Number of sequences better than 1.0e-003: 1

length of query: 217

length of database: 3,170,091

effective HSP length: 44

effective length of query: 172

effective length of database: 2,561,571

effective search space: 440590212

effective search space used: 440590212

frameshift window, decay const: 50,  0.1

T: 13

A: 40

X1: 16 ( 7.3 bits)

X2: 0 ( 0.0 bits)

S1: 41 (21.7 bits)

S2: 79 (39.1 bits)