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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.1 [Aug-1-2001]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 lcl|CAA15505 - predicted protein dJ257A7.2 [Homo sapiens] Length 163 (1 .. 163)
Sequence 2 lcl|F26H9.2 CE09707 (HINXTON) Length 521 (1 .. 521)



2 1

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

Score =  129 bits (324), Expect = 5e-30
Identities = 68/114 (59%), Positives = 84/114 (73%), Gaps = 2/114 (1%)





Query: 47  RRLSQRPTAEELEQRNILKPRNXXXXXXXXXXXXXXLTRKLSQRPTVEELRERKILIRFS 106
           R+LS+RPT EELE RNIL+ R               L RKLS RPT++EL+E++I I+F+
Sbjct: 395 RKLSERPTPEELEDRNILR-RRGMTSSEAMEEKRKLLLRKLSFRPTIKELKEQQI-IQFA 452

Query: 107 DYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRF 160
           DYVEV  A+ YDR+ DKPWTRLT +DKA IRKELN+FK+TEM+VHE SR  TRF
Sbjct: 453 DYVEVTQAEVYDRKTDKPWTRLTPSDKAMIRKELNDFKATEMDVHEESRVFTRF 506
CPU time:     0.06 user secs.	    0.03 sys. secs	    0.09 total secs.

Gapped
Lambda     K      H
   0.321    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 727
Number of Sequences: 0
Number of extensions: 60
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 233,319,389
effective HSP length: 106
effective length of query: 57
effective length of database: 81,590,247
effective search space: 4650644079
effective search space used: 4650644079
T: 9
A: 40
X1: 16 ( 7.4 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)