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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.1 [Aug-1-2001]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 lcl|XP_036589 - KIAA1078 protein [Homo sapiens] Length 856 (1 .. 856)
Sequence 2 lcl|F35B3.5 CE07172 (ST.LOUIS) Length 1102 (1 .. 1102)



2 1

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

Score =  104 bits (260), Expect = 4e-21
Identities = 64/201 (31%), Positives = 97/201 (47%), Gaps = 12/201 (5%)





Query: 654  SSLSLASLNTGDNESVHSGKRTPRSESVEGFLSPSRCGSRNGEKDWENASTTSSVASGTE 713
            + LS  S   G ++      ++  SE  E   S        G+   E   + SS+A  +E
Sbjct: 892  AELSARSTGRGHSQPPFIRTKSQMSEVTES--SRQNTPRMRGQSSVEQRVSVSSLAEPSE 949

Query: 714  Y----------TGPKLYKEPSAKSNKHIIQNALAHCCLAGKVNEGQKKKILEEMEKSDAN 763
            Y             KLY +   KSN+ +I NAL      G VN   ++  + +M  S + 
Sbjct: 950  YKKVNQVMKFVAPHKLYAKTVTKSNRGLINNALQFSVFPGAVNNATRQATITQMASSSSK 1009

Query: 764  NFLILFRDSGCQFRSLYTYCPETEEINKLTGIGPKSITKKMIEGLYKYNSDRKQFSHIPA 823
            +FLILFRD  CQ+R LYT+   ++   K++G GP   T+ M+  ++KY+S  K F++I  
Sbjct: 1010 HFLILFRDQKCQYRGLYTWDEISDTAVKISGQGPPKCTEAMMNSMFKYDSGAKNFTNIAT 1069

Query: 824  KTLSASVDAITIHSHLWQTKR 844
            K LSA++D   I    WQ  R
Sbjct: 1070 KHLSATIDGFAILDQYWQKAR 1090
CPU time:     0.31 user secs.	    0.03 sys. secs	    0.34 total secs.

Gapped
Lambda     K      H
   0.310    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6814
Number of Sequences: 0
Number of extensions: 488
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 856
length of database: 233,319,389
effective HSP length: 130
effective length of query: 726
effective length of database: 197,885,419
effective search space: 143664814194
effective search space used: 143664814194
T: 9
A: 40
X1: 16 ( 7.2 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)