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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.1 [Jul-12-2001]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 lcl|CAA15505 - predicted protein dJ257A7.2 [Homo sapiens] Length 163 (1 .. 163)
Sequence 2 lcl|AAF47787 - CG10860 gene product [Drosophila melanogaster]. Length 211 (1 .. 211)



2 1

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

Score =  157 bits (396), Expect = 2e-38
Identities = 82/117 (70%), Positives = 90/117 (76%), Gaps = 1/117 (0%)





Query: 47  RRLSQRPTAEELEQRNILKPRNXXXXXXXXXXXXXXLTRKLSQRPTVEELRERKILIRFS 106
           RRLS RPTAEEL +RNILK ++              L RKLS RPTVEEL+E+KI IRF+
Sbjct: 96  RRLSMRPTAEELVERNILKTQSPAEEKKQKEEKKSYLLRKLSFRPTVEELKEKKI-IRFN 154

Query: 107 DYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP 163
           DY+EV  A DYDRRADKPWTRLT  DKAAIRKELNEFKS+EM VHE SRHLTRFHRP
Sbjct: 155 DYIEVTQAHDYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMAVHEGSRHLTRFHRP 211
CPU time:     0.04 user secs.	    0.03 sys. secs	    0.07 total secs.

Gapped
Lambda     K      H
   0.321    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392
Number of Sequences: 0
Number of extensions: 24
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 233,138,231
effective HSP length: 106
effective length of query: 57
effective length of database: 81,526,961
effective search space: 4647036777
effective search space used: 4647036777
T: 9
A: 40
X1: 16 ( 7.4 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)